RnoINT0097293 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82199032-82203600:+
Coord C1 exon
chr8:82199032-82199297
Coord A exon
chr8:82199298-82203518
Coord C2 exon
chr8:82203519-82203600
Length
4221 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATTGTTCAACTGTGTTTCAGTTT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACTATCAAAGTGGCTCAGTGGCTATGCAACCGAAAAATAGTGACCTCCTCAGAAACTGTGGTGAAGCCCATGACCAGGCCTCAGGCCATCAATGCCAGGGACGCGCTGGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTAGAGCAAATCAATCAGGCATTGCACTTCTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq A exon
GTAAGATTCTCTTCTGCGTGCCCGCTTCTCCTCGTTTAAATGTCAAACGCCCTGTTATTTTTAAGTTGCACCCTTCCACTTGTCTTGCATATTTTAAAGATGATTTTTCCCCCTCTGGGTTGCATGTAGAGATGTTAAATATAGCTCCTGGGTCATGGTGTCCTTTCTGTAGAGTGCATTGAATAAACGGCAAACAAGGGCTAGGGAGATTTCTTAGCGGGCAAGATGCCTGCTATACAAATGTAAGTTTGGACCCTGACACAAAGCACAAGGGAGGCAGAGGGAGGCCAGCATAGCTGACCTGATGGGCTCCAGGCTCAACTAAAGACCCTGTCTAAAAAGAGGGCAATAGTGGAAGATACCCTGCCTTCCATGTGCATACATGTATGAGCACATACATGCACCTACAACAGCACAGGTACACAATAAATGCTAAACTAACTCACTGTGCAAACCAGCAAACATCACTGTGTGACAGGGCCCCTGGTAAGAGGCTTCTTGGTCCAAGCCATCTGGAAGCCATCCACTTAGAGATGTAACCACCAAAGCTTGGAAGAATTAAGCTGTTCACAGCTGGTCCTTTGGCAGAGGGATGAGGTCCACTTCAATCCCCTACAGGGCCCTGAAGTACTGAGCCCTGTAATACCCTCCTGTCCCCCAGGAGAACTGCTGGTTATGGTTGGATGGCATCCCCCAGTCTGCCTGGCCTGCCGTCTCCCTCCCTCACACATCTGCATTCCTGTTCTTTCTTGAGAGATAAGGGCTCGGCTTGCCCCACCCCTTCTTCAACTGTCCCACCCCTACTTCAAACAGCACAAAGCTTGGGCCACTTTGGAGTTTGGTCTCATCTTTCTCTTTGCCCTGTCCTGCTTTTCTGATCCTGGATCCTGCTCCTGCTGAAGGTGCTTGCAGAAGGCAAGGTGGAACCTGGTGCTGGGCTGTCCAGTTGTCAGAACCCCCCTCGGTCTCTGTCAGAACCCCCTCGGTCTCTGTCAGAACCCCCTCGGTCTCTGTCAGAACCCCCCTCGGTCTCTGTCCCTGCCACTCTCCCAAGACCACACCTGGCCTCTTGGGCACACCACTGGGAAGATTGTCCCAGAAAAGACTCGATACTTTCCATCAGTTAGGGACTCCTCCTCACACAAAAGGGAGGCACAGCCCTTCAACTTTTCACCCAGGAGAGCCAGCTGTTCCAGGTATTGACGGGAGTTAGCAAAGGGAGGGACTGTTTCATATAGATTTTAAGTGATTACTCATGGCTCTCAAGAAAACATATCAACAGTTCTAAAATACTAATACAGGACAGGATTAGGCTAGTAAATTATTTACCTTATCTTATCCCAAGAAATAATTTGAATAACCAGTAAAAAATTGAGTAAAATTGGGAAAAAAAATAATGTAGCCTAGTTTAAAACTCTTACATTGAAGTGGGAAGTGTTTGCTGTATTTTCTTGAACTTGCCTTTATTTTTTTTAAAAGACTTGTTTATTGTGTGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCAGCCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCAGAACTTGCCTTTAAAAATAGTGGACTTCATAGCTTAGGAATATATTTCTTCATATTTTTAATGATTTATTTTTATAAACGTGTGTTCATGTGTGTACATGTAGGTTTGTGCATGTGTGAGTGCTAGGGCTTATAGAGTCCAGAAGAGGGCGCCACATCCCTGACACTGGAGTTCAGGCACTTGTGAGCCACCCAACATTGGGTACTCGGAACTGAACTCTGTCCCTCTGCATGAACAGTAGGTGCTATTAACTGCCAAGCCATCTCCCTAGCCACTTGTTTATACTTTTATCTAACAAATAAGTACTTGCCAGGCACTGTGCGATGAAAGGTCCCTGCCTTCTGGGACTTCATTTTACTAGTGAAGAAGGCAAGGAAGGAGAAGTCAGAGTGACTACTGTGAGAAAAAAGATATGTGTGCATGTGTGCACATATGTGTGTATGTATGTGTGCATGTGTGTGTGCACACATATATGTGTATGTGTGTGTGCATGTGTATGTGTGTATGCATGTGTGTGTGTGTGTGTGTGTTTGTGTAGTATGATAGGAGAGGGAATTCAGATCCACAGAGTTCCAGACCGCTGTAGTGAAGAACTTGAATTTTGCAGCTAAGTGGCTGACTGTACAATGAAAGTGCTCACAAATTTTAAAACTTGTTAGAGTCCGTTAACATTACTAGTTGGGAGATGAAGCGCTTGTGTAGTGGATATAAAACTGGTTCATGGATTCACAGCTACCCCCTAAGTGGAAGCTCTTGTGGCCCAGGGTGAATCACTCACTCCTTAGCACGCTGGCCTGTGTGTTGATTCAGGTCCTAACACATATCGTGGCTTCGGGGAACTGAGCTCAGCTTAACCCAGATATGACAACGGCTGCCAGGAAAAGTTAGCATCCTTTAGCACAGGTGAAACTGCAGCCGGGAGCTTTGAGGTTCAACTGCAAAGGGAAGGAAACTTAATTTTGATGTCCCGGGCTGTCGTATGTTTATGCTCTTTGGAGCAGGCTTGGAAATGTCTGGGTCTGAGGCTAGCCCTCTGGGCTAGACTCTCCAGCACTGCAGTGGCATGTTTTCAGAGCACTGAGAGCCTCTCCTGCAGGATTGTCAGGACAGTCAGGTGGAAGAAGTCACCAAGCCATGAGCCTTAACGCCCTGGTCTTGGTGCAAACCATTGTCCCAGACAGCACGCCTCTGGCATCTTAAGTCGTAAGTCCCTAGGTTTTAAACTTCAGCTCACGGTACCTACAAAGGATCATCATTTGACATTGTGCCCTATTGAGGGAAACCCTGCTCCTTTTGGCCTTGGCCTGGTCCCTTCCAGGTCCAAGCTGGCTTCCATTTCTGGTGCCTTCACAATGTTACAAAAAGTGGTACAGCTGCCTCCAGTCAGCCTGGAGCTGTCCAGGGACCTACGGTGGGGCAGTGACCCCAGAGGACCAGAGCCACAAGGGACAAAGCCTTGGGCATGGAGAGGAGGGTAGAGGATGGGGATGCAAGCTAAAAGCTGACTTTTGGGTACCATTTGCTGTCCTTTGGGTCTCACCATGGCCTCTTGGACTCTGACCCTCCGTGAAGCAATGAAGTTATATTAATCCTCCACCTGAGGCAGTTAGAGCACAGAGAGGTGAGGCACACAAAGGCAGGCATCTTTTCAGGCTTCCTCCCAGCAGGATGCTCACCCCCCACTACCCTCAACCCTCCACAGGCAGAGGAGTCAGGGTAAAGTGGACACTGCGACCTCCTCTTGAGAATCAGCTAATGTGAAATCCTGGCCTGGGTTCACGAGTGGCCACAGCTGACGAGCTAAGCGAGGCTGTTCCTTCAGACAATCCTGCTTGTCGCAGGCCCCAAGGGGCTCACTGCTGTGCAGTAAGCATCCAATCCCCCATCACTGTATTCTGCCTGACTGCTCCAGGCTCTCGAGTTTACAAGTCACCCAGGTAACCCTGGAGACCGCTATTAAAGCCTGAACACAAGGCAGGGATGTGTGTGGCTTCCTGCTGGGCTAAGTTATTAAATGACCTTAGAGTTTTGTTCCAGGAACTCTGAAAGCCAGCCTGGGGAAGGCAGAATTGTCCTGTCTGCCCTCTGGATGGTCAGCGGGGAGAGGAGAGAAGTGTTCTCCCGTTGAAAGCCTAAGTGCTACTACCAATCAGATTCAGTGCTATGTCCTAAGAAATGGAACTAATCTCTCAGTCATTTTCCATTCTGTAGAGGGAGGACAGTAATGCCGACTCTGGTATTACATGGATTAATCAGTATGCCACTTGTAATGCCTGGCTTGGGGAAGAGGAATCATGTACAGTCAGATTCCTGTCCAGCCAGTGGGGAAAAGGGTAGTTTGTCAACTGGCAGCCAGCTTAGAAGGAGCCAGCAAGCAGCAGCTTTGAAGTCGTTCAGACTTGCCGAAAGCATAGCAAACCTCTTAAGCTATGGAGTCGTCACACACACACACACACACACACACACACACACACACACACACACACGCATGCAGGCACATGCACACTTTGCTATAATGAGCACCTAGGTCCTGGGCTTGCTCTCATTTTATTGTTCAACTGTGTTTCAG
Seq C2 exon
TTTTGAGACGTTTGATGTAAACAGCTTTGAACAGTTCTGCATCAATTACGCTAACGAAAAGCTGCAGCAGCAGTTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]