MmuINT0104469 @ mm9
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75105766-75110096:+
Coord C1 exon
chr9:75105766-75106031
Coord A exon
chr9:75106032-75110014
Coord C2 exon
chr9:75110015-75110096
Length
3983 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTGTTCAACTGTGTTTCAGTTT
3' ss Score
8.63
Exon sequences
Seq C1 exon
GAGGATGACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACCAGCAAAGTGGCTCAGTGGCTGTGCAACAGAAAAATTGTGACCTCCTCGGAAACTGTGGTAAAGCCCATGACCAGGCCTCAGGCCATCAACGCCAGGGATGCGCTGGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTCGAGCAAATCAACCAGGCGTTGCACTTCTCAGGCAAGCAGCACACTTTTATTGGTGTTTTGGACATTTATGG
Seq A exon
GTAAGATTCTCTTCTGCCTGCCTGCCTTTCCTCGTTTAAATGTCAAACGCCCTGTTGTTTTTAAGTTGCACCCTTCCACTTGTCTTGCTTGTTTTGAAGATGATTTTATTTTTCTTTGCTGAATGGAGAGATGTTAAATATAGCTCCTGGGTCATGGTGTCCTTTCTGTAGAGTGTGCGTTGAATAAATGACAAACTGGGACTAGGGAGATTTCTTAGCCAGCAAAATGCCTGCTATATAAACATTTAAGTTTGGATCCCGTCATTCATGTAAAAAGCCAGGCAGGGCACAGGGGAGGCAGAGGATGGCCAGCATAGCTGACCTGATGGGCTCTAAGTTCAACTAAAGACCCTGTCTCAAAGCGTTAGGCTGAGAATAATAGTGAGAGATACCCAACATCGACCCCTGCCTTCCATGTGCGTACGTGTATGGCCACATACAGCAGCACACGTATACAATAAATGCTAACTAATAATGGCTGCCAAACTCCATTGTGTGACAGACAGGTCCTGTGGTAAGTGGCTTCTTGGTCTTCAAGCCACCTGGAAGCACCCCCATGTTAGGTAACAACCAAAGCTTGGAAGAATTAAGCTGTTCACAGCAGGTCCCTTGGCAGGGGGATGTGAGCCATGTCAGTCCCCTACAGGTCCCTGAGGTACTGAGCCCTGTCATACCCTCCTGTTCCCCAGGGGCAGTGCCAGTTATGGCTGCTTGGCGTCCTCCCAGTCTGCCTGGCCTGCTGTCTCCTGCCCTCACACACCTGTGTTCCTGTCCTTTCCTGAGAGATAAGGGCTTGGGTCGCCCCACCCCTTCTTTAATTGTCCCACCCCTTCTTCAAACAGCGCAAAGCTTGGGCCACTTTGGAGTTTGGTTTCATCTTTCTCTCTGCCCTGTCCTGCTTTTCTGATCCGGGGTCCAGCTCCTGTTGAAGGTGCTTGCTGAAGGCAGGGTGGAAGCTGGCATGGAGGTGATACCAGGTGGCTTTCTAGTTGTCAGAAACCCCCCTCTCCTGTCCCTGTTCCTGCCAGGCTCTTAGGACTGCACTGGCTTCTCCACAGGACACTGGGAAGATTATCCCAGCAAAGACTTGATGCTTTCCGTCAGTTAGGGGCTCTTCCCCACATGGAGGGAGGGGACTGGGCCTTCACATGGAGGGAGGGACAGTCCATCAACTTTTCACCCAGGTAGAGAGCCAGCTGTTCCAATACCTGTTCCAGATGTTGAGGGGAGATACTGAAGGGAGTGACTGTTTAATATAGATTTTAACTGATTACTCATGGCTCGCAAGAAAACCTAGCAACAGTTTGAAAATACTAATACAGGACTGGATTAGGCTAGTAAATTATTTACCTTATCTTATCCCAAGAAATAATTTGAGTAACCAGTAAAAAATTGAATAAAATTGGAAAATAATAGAATAGCCTGGCTTAAAAATCTTACATTGAGGTGGGGAGTGTTTGCTGTATCTTCCAGAACTTGCCTTTAAAAACGGTGGACTTCTTAGCTTAGGAATATATTTCTTCATTTTTTTTTAATGATTTATTTTTATAGATATGTGTATGTATGTGTGTACACGTCCATTTGTGCCTATGTGGGTGTAGTACCCATAGAGTCCAGCAGAGGGTATCCTATTCCTGGCACTGGAGTTACAGGCAACTGTGAGCCACTCAACATGGGTACTGGGAACTGAACTCTGTCCCTCTGCATGAACAGTACGCCCTGTTAACTACAGAGCCACTTGTTTATACTTTTACCTAACAAATAATTACTTGCCAGGCACTGTGTGATGGAAGGCCTTCTGGGACGTCATTTTACTAGTGAAGGAGGCAAAGAAGTCAGGGTGATTACTGTGAGAGAAATAATGTGTGCACTTGTGTGCACGCATGTGTACATGAGTGTACGTGTGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCGCGCGCTCGTGTGAGTGTGTGCGTGAGTATTAGGATGGGAAAGGGAATTCAGATCCACAGAGTTTGAGACCACTGTAATGAAGAACTTGGGTCTTGCAGCTAAGCAGCCTATTATATGATAAAAGTGTTTACACCTTTAAAAACTTCTCAGAGTCCATTAAATTTTCTAGTTGGAAAATGATACTCTTGCGTAGCGGTTATTAAAATGGTGCATGAATTCATAGCTCCCCTCTAAGTGGCAGATCTTTGTGGCCCAGGGTGAATCACTTCCTAGCACTCTGGCCTCTGTGTTAATCTGGGTCCTAACATGTATTGTACCTTCTGAGGGAACTGAGCTCAGCTTAACCTGGACATGACAATGGCTGCTATGAAAAGTTAGCATCCTTTAACACAGATAAAACTGCAGCTGGGAGCTTTGAGGTCCAAAGTACAAAGTGAAGGAAAATTTTTATTTTTGATGTCCCAGACTATCCTGTGTTTATGTTCTCTGGACCAGGGTTGAAAATGTCTGGACCTGAGGTTAGACCTCTGGGCTAGCCTCTCCAGCACTCTAATGGCACGTTTTCAGCCACTGAGGACCTCTCCCGCAGGGCTCTCAGGACAGTTAGATGGAAAAAGTCACCAAGCCATCTTGAGCCTTAAGCCCTGGTCTTGGTGCAAACCACAGTCACAGACAGCAGCGCCTCTAGCATCTTAAGCCATAGGTCCCTGGGTTTTAAACTTCAGCTCACAGTACCTACAAAGGATCATTGTTTGACAGTGTGCCCTACTGTGGGAAACCCTGCTCCTTTTGGCCCTGACCTGGTCCCTCCCAGGTCCAAACCGGCTTCCATTTCTGGTGCGTGAATGATACAAAGAATGGTGAACAGTCACCCTGGAGCTGGAGCTGTCCGGGAACCTATGGCAGGGCAGTGACCCCATAGGACCAGAGCCACAAGGGACAAAGCCTTGGGCATGAAGAGGAGGGTGGAAGATGGGGATACAAGCTGCCTTTTGGGTACCATTGACTGTCCCCTGGGTCTCACCATGGCCTCTTGGACTCTGACCCTTCCTGAAACGATGACCTTATATTAACCCTCCACCTGAGGCAGAGTTAGAGCAAAGAGAAGTGAGGCACACAAAGGCTGGCATTTCTAAAGGCTTCCTCCTCCGGACAGGATGCTCGTCCCCACTCCCCCTCCCCCATCCACCGCCAGAGGAGTCAGTGTACACTGTAGTAAAATGTACACTGCAGCCTCCTCGTGAGAATCAGCTAATGTGAAATCCTGGACTAGGCCCACGTATAGCCACAGCTGGCAAGAGCTAAGCGAGGCTGATCCTTAAGACAATCCTGTTTGTCACAGGCCCCAAGGGGCTCACTGCTGTGCAGTAACCAGCCAGTCCCCCATCTTTGTATTGTGTCTGACTGCTCCAGGCTCTTGAGTTTACAAGTCAGTCGCCTGGGTAACCCTAGAGACAGCTATTAAAGCCTAAAGGACAGACAGGGATGTGTGTGGCTTCCTGCTGGGCTGAAGAACTCTGAAAGCCAGCCTGGGGAAAGGCAGAGTCGTCAGAGAGAGAGGAGAGTGTTCTCCTATTGAAAGCTCAAGCGCTACTGCCAATCAGGCTCAGTGCTATGCCCTGAGAAATGGAGCCAACCCCTCAGCCATTTTCTGTCCTGTAGAGGGAGGACAGTAATGCTGACACCAGTGTTACATGGATTAATCATTGTGCCGCTTGCTTGCGACAGGTCTACTGTAATGCCTGGTTTGGGGAGGGAATCATGTACAGTCAGATTCGATGCAGGAGACAACCAGTGGGGAAAAGGGTAGTCTGTCAACTGACTGCCAGCTTAGAAGGAACCAGCAAGCAGCTTTGAAGTAGTTTAAACTTGCCGAAAACATAGCAAACCTCTTAAGCTATGGAATCGTTAAACACACACACACACACACACACACACACACACACACACACACACACACACGTATGCATTAGTTACAATGAGCATTAGGTCCTGGGCTTGCTTTCATTTTAATTTGTTCAACTGTGTTTCAG
Seq C2 exon
TTTTGAGACCTTTGATGTAAACAGCTTTGAACAGTTCTGCATCAATTACGCTAATGAAAAACTACAGCAGCAGTTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-Myo5c:NM_001081322:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: