HsaINT0108836 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52248700-52251515:-
Coord C1 exon
chr15:52251390-52251515
Coord A exon
chr15:52248784-52251389
Coord C2 exon
chr15:52248700-52248783
Length
2606 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
TAATTGCTTTCTCTGTATAGGTA
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTACCACATGGAACTGATGAAAACTGGCTTCAAAAGCTGTATAATAATTTTGTCAACAGGAACCCTTTGTTTGAAAAGCCTAGAATGTCAAACACATCCTTTGTCATCCAGCACTTTGCTGATAAG
Seq A exon
GTACCGTGAAGGTCTCCATCAATGCTGTCAACCCCGGAACCTGTACAGCCTCCAGAAGGAGTAGGCAGGCCAGGAATGTTTCTGATCAGATTCAAGTCATACTTAACATGTAGCTTTGATGAGTGTGTGTTTAACAGTTCCTTATTTGTTTTTGTGGCGAGATACATGAGTTCCAACTGTACTACTTTAAAGACGAATGTGTTGTTAGAAGACCACACTTCTGATTTTGGATGTACTGAAGTTACTGAATTTCATTAACCTCTTATCAGTTTATTTTCTATATGAAATTGTGATAATCAAGACAGCATAATTCTTCCTTATGATGAAAGCTATATTTTTTTCTGAAGTTCTATTTGATTAAACTGGACTATATTACAGTGGCAACATAGGTTAACTCAAGATGATAATGGGTTATCTTCGTGCTTTTTTTCATCTTTTGTGTCTTCTTTTTCTTTATACGTCTCCTTTTTCTTTTTACTAAACAAATGTTACTTGTCTAAAATGAAAAATTTTTGTTAAAATCACATTATAGAAAGCTTAGAAAACAGAAGGAAAAAATTGCCATAACCACCTGCCCTAAATGTACATTCTTATTTGTTTTCCTTCCTTAAGGGAGCTCCTACCTCCTCCCATGTCCTGGTTGGGTGTTGCCTTGGTGGCCTAGCCCAGTGCCAGGGCTCACAGGAATGGCTTGTGCTTGTCTATGTTTATCGCAGAGGCCGGTGCTGTGAGTCAGAGCTGGTCATTCCCGAGTGACTGATGGTGGAGGGAGGGGACAGCAACCTGGAAAGCTGTGATCACCTTTGTGTGCTAGCAGAGTACTGTAAAATATTAAAATATAGGATTGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCGCTTGAGACCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTTTACTAAAAAATACAAAAATAAGCCAGGCGTGGTGGCACGCACCTGTAATCCCAGCTACTCAGGTGGCTGAGGCAGGAAAATTGCTGGAACCTGGGAGGCGGAGGTTGCATTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGCTGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAAAAGATAAGTTTTTAGTGCTTAGACTTTTTCAGATGGGCTCCTGAAAAGATGCCTATGAAATGAAATGATCATATGTCAAATTATATTTCCTAGCTATTGTCATAATTTCAGGGTTCTGGTCCCATAGGAAAAGGGAGGGGGAAAGACCAGACTCCATAAAAAGCACATATGGGATTTCTTTCAAGGGTCTCTCTTTATAGGATGTAGTTTCTGGACATGTAATTCTCTCACCTGCCACTTCCAAGAAGTCTCCCTTAAAAGAACTAGGCAGCGTTTGGGCTGGACTATGGATTGATTGGTGGGAAGAACCCACATGCACTATGGGGTTAGATTAGGTTTTCAATCTCATTGGCCAGGGAAATCAGGTCGTATTGAATGCAAGTCAGCTGAGCTTAGATGTAGCAGCTCAGCACATCTTCCTTTGGTCCCAGAGTCCCCAACAGAGGCACCAGCTGCATGTGACACTGTCCCCACAGATGCTCGCCCAGACCAGGAAAGCTCTGTATTTGCCACCTTTGTCTATCTGTCCTAGTGGCTCACACCACCATTCTGGAAGAATTTGTACAACAATCCAGGTACTTCATTCACAAAGAAGTGTTTGCAAACAGCCGGTGTTCCTGGATCTTAACCTACCTACCGGCAAGGATACTTCCTTACCTGGGGGACAAAGCAGAGGCCATGCCCAGGGAACCCTCTGCTTACGGATTCCAGCACTCTCCCCTGTTTCCTCATTGTCAATTTTTAAAATTAATTTTAATATACGTTTTTAATTTATGAAAAATAAATTATCACATATTAAGATATGCAATCCAGAGGCATAAACTAGGGGGAGGTTGAATGTTGAAGCAGCCACCCTGGATATGCCATGGTTTGAGGCATTCGAGAAGCCTTCTTCATCAGAAAGGGCAGCATGGAGAGTTTTTCTAAGCTAGATTCAAGCAGTGCAAAGGTTGACCCACTCTAAACCTGATTCTGAGGGCTTGGTGGCTCTTGAAGGCTTGGTGGTCAGCTGGTCGGTTTTTCTATCCTTTCTACCACATTAATGTTGATTTAGGAAACGATGTCTGTTTGAACCCAATGAACACCACTAAGCTTTTTCCTCCTCCTGGTGGCTTCAAAGGCAAAGGGAGACCTAAGTCAGGTGTTCTTGTAGGAACTGCACATACCGCAGGGAGCAACTGGACCCCTGTGGCCAGAGGGAGCCAACAGGTGAGTGCAGAGTGATCAGCAGGCAGGTGAGAAACCCAGGTGGTGGGAGAGAAGACACATTCCCAGCTTATACATAATGGGGCTGCTGCCATGATGCACAGAAGCCAGACGTCTTTTTGTAAGATTGCCTCTGTAGCCTTTTTTATTAATCTTTCTTAAAAAAGAGATGAAACTTGTGCTTAGAGGCTATATTCTTTGGCCTCTTTGGGAATAATTAATTGCTTTCTCTGTATAG
Seq C2 exon
GTAGAGTATAAATGTGAAGGTTTCCTGGAGAAAAACAGAGACACCGTCTATGACATGCTGGTTGAAATCCTGAGAGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development