MmuINT0104472 @ mm9
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75113875-75114915:+
Coord C1 exon
chr9:75113875-75114000
Coord A exon
chr9:75114001-75114831
Coord C2 exon
chr9:75114832-75114915
Length
831 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCTCTCTCTCTCTGCGCAGGTG
3' ss Score
13.76
Exon sequences
Seq C1 exon
TTGCCTCATGGCACCGATGAAAACTGGCTTCAAAAGCTGTATAACAATTTTGTCAACAAGAACTCGTTATTCGAGAAGCCTAGAATGTCAAACTCATCCTTCATCATCCAACATTTTGCTGACAAG
Seq A exon
GTACAGTGACGTCTTGACCACTGTGCCACACCCAGGTCAGAACTCTTCTGGTGTGGTTGGATTCAAGTCCCACTGAGGGGAGCTGGGAAGACAACTGGTCAGTAAGGTGTTTGGCTTACAAGCATGAGGACCTGCGTTCAGTCTCTCTTCAGACAAACCAGGCATGGTGACACACATCTGTAATCCATTAGGGGAAGATGTTTTACTGCAGGTAAAAGAGGGAAAAAGTCCAGAAGCATCTGGAAGAGTCCAGAGCAGAGAAGGAAGCAGACTGGGCATGCCCAGGACTAACACTGAGAGAAGGGAGAACAGCAGGAGGGACTAGTGGATAGACAGCAAGAAAATAGCACATGCGGGGGGGGGGGGGGGATGCACGACTAGTGAGATAGCAAGATAGAAGAGAAGAACTAAAAGAGCAGGACTAGAAGAGAAGAGCAGGTTATAAACCAAGTATCTGGGAGATACTTCCTGGAGGGATATGTCCTAGAAGTATCTCCTGTGAACTGGAGCAGGCCTGTGGGTTTGTGTCGGAAGCTCCAACACCACAGAACAGGTAAACTGAGGCAATTGATCGCTCAGCAGACTTTTCTCTGAGGGAACAAAACTTGACTCCCAATTTCCTGAGCAATGCTGGCTTATATCTAAACACCAGAGATCTTTCTGTAGTCCAGATTGAGTTCATTTCTGGTAGAATTCGTGCTTAGTGCATCTAAAGCCCTGGGAGTGATCCCATATCCTACAAAGAAAAGAAGGGGAGAGAAGAAACAGGCTTGTACCTGATGCTTGTGCTCTGGCCTCTGGGGTAACGGGCCTCTCTCTCTCTCTGCGCAG
Seq C2 exon
GTGGAGTACCAATGTGAAGGGTTCCTGGAGAAGAACAGAGACACTGTCTATGACATGCTGGTGGAGATCCTCAGAGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-Myo5c:NM_001081322:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGGCACCGATGAAAAC
R:
TTGCTTGCTCTGAGGATCTCC
Band lengths:
206-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: