RnoINT0097296 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82207265-82208388:+
Coord C1 exon
chr8:82207265-82207390
Coord A exon
chr8:82207391-82208304
Coord C2 exon
chr8:82208305-82208388
Length
914 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
ACGGGCTCCTCTCTGCACAGGTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
TTGCCTCATGGAACTGATGAAAACTGGCTTCAAAAGCTGTATAACAATTTTGTCAACAAGAACTCTTTATTCGAGAAGCCTAGAATGTCAAACTCATCCTTCATCATCCAACATTTTGCTGACAAG
Seq A exon
GTACAGTGATGTCTTGACCAACGTGCCATACCCAGGTCAGAACTTTTCTGCTGTGGTTGGATTCAAGCCCCACTGGGGGGAGTGGGGGAGACAACTGCTCAGTAAAATGTTTGCCTTACAAGCATCAGGACCTGGGTTCAGTCCCCAGATCCCTTTGTAAGACAAACCAGGCATAGTGACACACATCTAGAATCCATTAGGAGAAGATGTTTTATTGTTGGTAAAAGAGAAAAAAATTTCTAGGCATCTGGAAGGGTCCAGAGCAGAGAAAGAAGCAGACTGGACGAGAGAAGGGAGAATGGCAGGAGGGAATAGTGGAGGGATAGCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAGACAGACAGAGAGACAGAGACAGAGAGAGAGGGGAGAGACAGAGAGAGACACAGACTAGCGAGATAGCTAAAGCAGGACTAGAATAGCAGGTTATAAGAACAAGTATCTGGGGTAGAGAAGCCTATGAGCTAGAGCAGGCCTGGGGGCTGTGGGTTGTGTCAGAAGTCAGCTCTGACATGACAGGTACACTGAGGCAGGCCATAGGGTCGGTGATTGGTCAAACAGCAGACTTTTCTACAAGTTCCTGCGGAATGTTGGCTTATATCTAAACACCAGAAATCCTCCTATTGTCCGGATTGAGTTCCTTTCTGGATATATGTACTGCCTGAGACCTAACAATACACACACAAAGAGAGCCTGGGGGTGTAGCTCAGTGGTAGAATGCATGCTTAGTGCATGTAAAGGCCCGGAATTGACCCCATGCACTACAAAGAAAAGAAGGGGAGAGAGGGAACTGGCTTGTACCTGATGCTTCGTGCTCTGGCCTCTGGGGTAACGGGCTCCTCTCTGCACAG
Seq C2 exon
GTGGAGTACCAGTGTGAGGGGTTCCTGGAGAAGAACAGAGACACTGTCTACGACATGCTGGTTGAAGTCCTCAGAGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCATGGAACTGATGAAAACT
R:
TGCTTGCTCTGAGGACTTCAAC
Band lengths:
207-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]