HsaINT0108944 @ hg38
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr11:77155907-77156781:+
Coord C1 exon
chr11:77155907-77156091
Coord A exon
chr11:77156092-77156659
Coord C2 exon
chr11:77156660-77156781
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCACTCCCTCCCTCTGCAGTGG
3' ss Score
9.74
Exon sequences
Seq C1 exon
ACGTATACGGGCTCCATCCTGGTGGCTGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTATACCAACAAGAAGATTGGGGAGATGCCCCCCCACATCTTTGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAGCCGAGACCAGTGCTGCATCATCAG
Seq A exon
GTGGGCGGCCCAGCACCTGTGTGGAGCTCCAGGCTTAGGACCTAGAGCTCCAACTGTGCGCTCCTGCTGATACCTCTAGGAATTGCCCCCGCTGTCGGAAATGCCATCAAGCTCTTCAGGAACCAGACCTATGTACTCTGTGCTGTGTAACAATGTAGAAAATCACCTCCCCTTTCTGGGGTCTTATATCTCTGTGCTACCAAAGCTCACATTAGCTTTTGAGGCCAGCCTTGTTTACTGCTGGTTCCTGTTAAGTTATGGTCAGTTGACATCTCAGGCTCCTATTTTCTTTTGGGCAGAGGGCAAAAGACAAAGCATTGACTGAGCATCTAATATGTGTTGTGCTCTATGACAAGTATGGATGCAGGTGTATTTGTATCTGAACGAAGGTGAAGGAGAGTGCGGTGGAGCACTGGGCCCTTGAGCCCTGCCCCAGCCCTGGAGGGTCCGTATTGTCAGCTGATATTACAGATGGGGGAGCTGGTGGATGGTGCAGCCTGGGCTGAGTTCCAGTTGGTGGGGAGTCCCTGTGGGTTGTGACAGGTCCTGCCACTCCCTCCCTCTGCAG
Seq C2 exon
TGGGGAATCTGGGGCCGGGAAGACGGAGAGCACAAAGCTGATCCTGCAGTTCCTGGCAGCCATCAGTGGGCAGCACTCGTGGATTGAGCAGCAGGTCTTGGAGGCCACCCCCATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474:ENST00000409709:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACGGGCTCCATCCTGGTG
R:
CTTCCAGAATGGGGGTGGC
Band lengths:
304-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development