MmuINT0104583 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98097613-98098371:-
Coord C1 exon
chr7:98098187-98098371
Coord A exon
chr7:98097735-98098186
Coord C2 exon
chr7:98097613-98097734
Length
452 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTGACTCCCACCCTCTGCAGCGG
3' ss Score
8.53
Exon sequences
Seq C1 exon
ACGTACACAGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTACACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTCGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATTATCAG
Seq A exon
GTAGGTGGCCCGGCCTTACTCCCAGTGAGAGGCACAATTCTGCTGCCCTGCTAACACACTAGGAATTGTTCCATCGTTAGACTGCCAGGGGGCTCCCCGGGAGCTGGATGTGCCCTCTGTGCTGTGTCATAGTGTATGGAGTCACCCCCACATTCCAGATCTTACAGTTCTTTTCTCTTAACCCTACAAAGACTGATGCTAGCTTTTCAGGTCAACACTGTCTCCTGAGGGTTCCTATTAAGTGATGGTCAGTTGAAATCTGTCTTCTTTGCTCTTGGGCAAGGGAAGAGGTCAAAACATCAGTTGAGCAGTTCGCATGATTCATATTCTTGACCAGGAGGGATGGGGGTGTGGCAGAGCCCTTTGTCCCTGAAGACTCGACCTATTGTAACAACTGCGGCTAGTGTCACAGCCAAGGCTGAGGACTTGCCCGTGACTCCCACCCTCTGCAG
Seq C2 exon
CGGGGAGTCGGGAGCTGGCAAGACAGAGAGCACAAAGTTGATCCTGCAGTTCCTGGCAGCCATCAGTGGACAGCACTCATGGATCGAGCAGCAGGTGCTGGAGGCCACCCCGATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTACACAGGTTCCATCCT
R:
CTTCCAGGATCGGGGTGGC
Band lengths:
307-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types