DreINT0101086 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22215605-22216000:+
Coord C1 exon
chr21:22215605-22215789
Coord A exon
chr21:22215790-22215878
Coord C2 exon
chr21:22215879-22216000
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTACCATGTTGCGTGTTCAGCGG
3' ss Score
8.27
Exon sequences
Seq C1 exon
ACATATACTGGATCAATCCTGGTAGCGGTGAATCCATACCAGCTTCTGCCCATCTACACCCCCGATCAGATCCGGCTCTACACCAACAAAAAGATCGGAGAGATGCCGCCGCACATCTTTGGCATTGCAGACAACTGCTACTTCAGCATGCAAAGAAACAAGAAGGACCAGTGCTGCATCATCAG
Seq A exon
GTAACTAAAAGCCTGCACAGCAGCATGAGGATTAATGTTTTTACTACTGGTTAGTGCACATGACCCTGTTTACCATGTTGCGTGTTCAG
Seq C2 exon
CGGTGAGTCTGGAGCTGGAAAGACGGAGAGCACCAAGCTCATCCTGCAGTTCCTGGCAGCTATAAGTGGCCAACACTCCTGGATTGAGCAGCAGGTTCTGGAGGCCAACCCGATTTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCGGCTCTACACCAACA
R:
AACTGCAGGATGAGCTTGGTG
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]