RnoINT0097408 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163049206-163049940:-
Coord C1 exon
chr1:163049756-163049940
Coord A exon
chr1:163049328-163049755
Coord C2 exon
chr1:163049206-163049327
Length
428 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTCTCTCCCACCCTCTGCAGCGG
3' ss Score
9.75
Exon sequences
Seq C1 exon
ACATACACGGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTGTCCATCTACTCGTCAGAGCACATCCGCCAGTATACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTTGCCATTGCCGACAATTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATCATCAG
Seq A exon
GTAGGTAGTCCAGCCTCACCCCCAGTGAGAGCCCCACTTCTGCTGTCCTGCTAACACACTAGGAATTGTTCCACGGTTACACTGCCATGGGGCTCCCCAGGGGCTGGCTGTGCTCTCTGTGCTATGTCTTAGTGTATGGAGTCACCCCCACAGTCCAGATTTTACATTTCTTTTCTCTTAACACTACAAAGGCTCAGGCTAGCTTTTGAGGTTAACATTGTTTCCTGGGGGTTCCTATTAAGTGATGGTCAGCTGAAATCTGTCTTCTTTTCTCTTGGGCAAGGGAAGAGGCCAAAATGCCAGTTGAGCAGTTCGCATGCTTCATATTCTTGACCAGTAGGGATGCGGGTGTGGCAGAGCCCTGTGTCCCTGAGGGCTAGTGTGACAGCCAAGGCTGAGGACTTTCCTGTCTCTCCCACCCTCTGCAG
Seq C2 exon
CGGGGAATCAGGAGCTGGCAAGACAGAGAGCACAAAGCTGATCCTGCAGTTCCTGGCGGCTATCAGTGGACAGCACTCATGGATCGAGCAGCAGGTGCTGGAGGCCACCCCGATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACGGGTTCCATCCTGGT
R:
CTTCCAGGATCGGGGTGGC
Band lengths:
305-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]