HsaINT0108962 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128364781-128366453:+
Coord C1 exon
chr2:128364781-128364999
Coord A exon
chr2:128365000-128366282
Coord C2 exon
chr2:128366283-128366453
Length
1283 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
TTCCTCCACGGGGTATGCAGGCG
3' ss Score
2.57
Exon sequences
Seq C1 exon
ATCCTCGTGGGCTTTGAGCGCCTGCAGGCTATTGCCCGGAGCCAGCCGCTGGCGAGGCAGTACCAGGCCATGCGGCAGAGGACAGTCCAGCTGCAGGCCCTGTGCAGGGGATACCTGGTGCGCCAGCAAGTCCAGGCCAAGAGGAGGGCAGTGGTGGTCATTCAGGCCCATGCCAGGGGCATGGCTGCCCGGCGCAACTTCCAGCAAAGGAAGGCCAAT
Seq A exon
GTAGGTGGTCACCTGGCCTCTTGGGCAGGTGGGGCTGGCTGGGGCCCCAGTGGGTGAGGGCAAGAAGGAGTGAGCGGCTGTGTAGAGAGCTCACCAGAAGCGCTTTGGAAAATCCCCCCGCCCCCGCCACAAGCCAAGACGTTAAAATCTGTTCAATTACTCAAGAGCACAGCAAGGATACAGGACACAAGATGCAAATTAGCAGGCACCTGGGCTGAGATGTAGCTATCACGAGAGACACACCGTCCTCCTCTCCCTATTCAAAGTCAGTTCTACAATGGCTCTGCAATGGCTGGGGAGCCGTGGCCACCACCCAGGAGCACGCAGGGTATAGCATGGGAGAGGCAGCAGGTCAATGGGACAGCCTTAGCCTTGAACCTGGAAGGTGAGCTCAGGTCCCCTCCCTTTCACCTTGGAGATGATTTCTGGGGCAGGGATGGTTGGTCCCCTGGAAGGTGCAGCAAAGCTGAGCCAGACAAGCTGGGAAAGGCCCCAGTTCCATGGAAGAGAGCAAAGTGTCCTGGTTACTGGGCTGTGTATGACAGCTCAGGGGACAGAGAAATATTAATACCAAGGGGAGCTGCTGAGTGTCTGGGGGGCTGGGAGGACACTGAGCAGGGGGACAGCACCAAGAAAATAACCCCATTTCCTCCATCGAGTACTCGAGACTCAACCTTCACACTTGGCTCATTTGGAAGTTGTGATAAGGCAAAGGGGCTAGGATGACGTTGACTTCTGCTCCATGGATGAAAACTTGGTCTACTAAGCACACTGCTAATACAGTGAACAGGGCAAATGAGAGAATGCACCCATAGACACGTCAGCAGCATGCTTCTGCACCCGCATGCCCCCAGCTGCCTGCAAAGCAGCCTTATCTGTGACTTCGTTACTGCAGCCCCTGGGGACCTGTCCTGGTGGACCCTTTTTGCCCTTTGAATAAAGGGACCAAGTGGTCCTGAGCAGTGGTTGTGCAGCTGGGTTCCTGGGGGTCCCTGGAGTTTGAAGGGGTGCCTTAAGAGCCATCTGAGGGTAGGGACAAGCCAGCAACCTCACCTCTCCAGAGCTCTGATTATCACTGGGAAAGGGAAAGCCCTGGCTGGTTGATCTCTAACCACACTAGCTGTTAAAATCTACTGTTTCAGAGCAGAATATTGATTTGGACAAATGATGGCAGGATGAGGCTTACTTGGCTTCTGGGAGGTGCTTGCCCTGTGGGGTAGGCAGGGCTGGGCCCCCTGAGCCCTGCTGGGCCCCTGGGTAACCTTCCTCCACGGGGTATGCAG
Seq C2 exon
GCGCCGCTGGTCATCCCGGCCGAGGGGCAGAAAAGCCAAGGCGCTCTCCCTGCCAAGAAGCGCAGATCCATCTACGACACCGTCACTGACACGGAGATGGTGGAGAAGGTGTTCGGCTTCCTCCCTGCCATGATTGGGGGCCAGGAGGGCCAGGCCTCGCCGCACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCGTGGGCTTTGAGCG
R:
CCAATCATGGCAGGGAGGAAG
Band lengths:
356-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)