BtaINT0098323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4848337-4848938:-
Coord C1 exon
chr2:4848877-4848938
Coord A exon
chr2:4848489-4848876
Coord C2 exon
chr2:4848337-4848488
Length
388 bp
Sequences
Splice sites
5' ss Seq
CATGTCAGC
5' ss Score
-1.48
3' ss Seq
GGTGCCCCTCGTCATCCCAGCTG
3' ss Score
4.41
Exon sequences
Seq C1 exon
GTCCCCTGAGCACAGTACTGGTACAGTGGCCAGAGCGAGAAAGAGTGCAGAGCCTCAGACAT
Seq A exon
GTCAGCAGATGCTCCTACACCTATATGGCCTTGGACAAGCAACAGACCGGGCGGGCCAGGGCCCTCTCCCTGCTTTTAGTGAAGGGACCACGTGGGCCTGAGTGGGTTTTGCAACTAGGTTCTAGGAATCTGTGGGGTTTGGTGTGGTCCCATGTGGGGACAAGCAAGCATGTCCCTTCTTTACATCTTCTCTGAAACAGGAAGCCCAGGCTGGTTGATCTCCAGTCCCTCTAGCTATTGAAACCTAGGATTTTAAAAGGAAACGTATTGATTTTGACAAATACGGCAGCAGAAGGTTTATTCAGCTTTGTGAGGGGCTTGCCCCAGCTGGGCTGGTGGCAACTGTGGCCCCATGGGTTATCTGTGCAGGTGCCCCTCGTCATCCCAG
Seq C2 exon
CTGAAGAGCAGAAGAGCCCAAGCGCTGTACCCAAAAGGAAGCGTAAGTCCATCTACGACACCATCACCGACACGGAGATGGTGGAGCAGGTGTTTGGCTTCCTGCCTTCCCTGACTGGTGGGCAGGATAGCCCGGCCACACCGGACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.686
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCTGAGCACAGTACTGG
R:
CTCAATGTCCGGTGTGGCC
Band lengths:
214-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]