GgaINT0031410 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2289115-2289618:+
Coord C1 exon
chr9:2289115-2289222
Coord A exon
chr9:2289223-2289441
Coord C2 exon
chr9:2289442-2289618
Length
219 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATGAACTTCTGTGTTTAAAGGAA
3' ss Score
6.27
Exon sequences
Seq C1 exon
AACAAAGTCAAGCTGGAAGCAAGGAATATCCGCTTGGAAGAAGAGAAACGTCTCATTAGTGTCCTTGGGCCAGTGAAAGCAAGGGAAGAAGCTATGAAGTTAGAAAAG
Seq A exon
GTAGGTACAGCAGCTAAGGAATACTGAACATAATATGCTTTTCTGGTATAATCACTAAGAGATACAGTTCTTGAATATAGAACATTATTATTAATAGACCAACAGTCTACAAAGACAGCTGTAGGAGCAAAGCACTTTGTAATTGCCTTTTATCCTCACACCCATTTCTTTTAGCAGAATGATGTTCCAATCATGCTTAATGAACTTCTGTGTTTAAAG
Seq C2 exon
GAACACCTGGCTATTCTGGAAGAAGAAGAGGAAGAAGGACAAAGGATGAATAATGATTTTGTTGACAGACACACAAATTATGATGTTATCAGTGACCAGGAGATGGTGGACAAAATTTTTGGGTTTTTACCTTCTATGATTGGAGGCCAAGAAGGACAGGCTCCTCTGGGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCAAGGAATATCCGCT
R:
CTCAAAGCCCAGAGGAGCCT
Band lengths:
272-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]