RnoINT0097426 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24769967-24771273:-
Coord C1 exon
chr18:24771055-24771273
Coord A exon
chr18:24770138-24771054
Coord C2 exon
chr18:24769967-24770137
Length
917 bp
Sequences
Splice sites
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
3' ss Seq
TCTCTATGGGGTGTGTACAGGGA
3' ss Score
4.9
Exon sequences
Seq C1 exon
ATCCTCATGGGTTTTGAACGGCTGCAAGCCATTGCCCGGAGCCACCTGCTGATGAGGCAGTTCCAGACCATGCGACAGAAGATAGTGCAGCTGCAGGCCCGCTGCAGGGGCTACCTGGTGCGACAGCAAGTGCAGGCCAAGAGGAGAGCAGTGGTGATCATTCAAGCCCATGCCAGAGGCATGGTGGCCCGGAAGAGCTACTGGCAACAGAAAAGCAGT
Seq A exon
GTAGGTAGTCACTTGGTATGAGAGGGAGGTAGGGTTGGCTGGGGCCAAGAGGGAAATTGATGAACAGCAATTAAGGATACTCATGAGAAGACCCTTGAGAACATCCAACATTCTCAAGCAAAGATGTTTAAATCTACTAGAAAGTTACTAGAAATACAACAAGAATCCATGAAGGAGATGGTTCTGGGGCTGGAATTTGGATTGTACAAAATGACTGGGAAGATAGCTCAATTAGTAAATGTCTTAGTTAGGGTTTCCGCTGCTGTGAAGAGACACCATGACAACTCTTATAAAGGGAAACATTTCATTGGGGCTGGGCTGCAGTTCATGGATTAGTCCATTATCCTCATGGTGGGAAGTATGGTGGTACAGCAGACATGATACAGGAGAGGTAGCTGAGCGTTCTAGATTAGCAGGCAGTAAGAAGAGAGAGTGACACTGGGCCTGGCTTGGGCATCTGAAACCTCAAAGCCCACCCCCCAGTGACACCCTTCCTCCAACAAGCCACACCTACTCCAACATGGCTACACCTCCTAATAGTGCCACTCCCTGTGGTCCTATGGGGGCTACTTTCATTCAAACCACCCCAGTAAAGCACTTGCCATATTTCCTGTTGCTATGATAAGATATCCTGACAAAAACAATTTAAAGGAAAAAGGATTCATGTAGGAAAGTCGAGGTTGCAGGAAGTTGAAGCAGCTAGTCGTCTTAACAACCAGCCAAGAGCAGAAACCCAGGGAGGTGCATCTTCTTCCCCCACTCATATAATCCAGGATCAGCTGCCCATAGAATGGTGCCACTCACCCTGTGTGGTATTTCCACCTCAATTAATGTAACCAAGATAGCAGACGTGCTCCCAGTCCAACCTGATCTAGACAACTCCTTTAAGTAACCTTCTCTCTATGGGGTGTGTACAG
Seq C2 exon
GGACCTCCAGTCATCCTGGCTAAGGAGCCAAAGGGCCAAGGTGTGGCCCTTGACAGGAAGCGTAAGTCCATCTATGACACCGTCACTGACACAGCAATGGTGGAGAAAGTGTTTGGCTTCCTCCCAGCTATGATTGGAGGTCAGGAGGGTCCAGCCCCAACACGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=27.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATGGGTTTTGAACGGC
R:
TCATAGCTGGGAGGAAGCCAA
Band lengths:
351-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]