BtaINT0098272 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57369845-57370619:+
Coord C1 exon
chr15:57369845-57370063
Coord A exon
chr15:57370064-57370511
Coord C2 exon
chr15:57370512-57370619
Length
448 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGCCACCTGCCTCCCCCAGTAC
3' ss Score
6.98
Exon sequences
Seq C1 exon
ATGCGGCTGGGCTTCCTGCGGCTGCAGGCCCTGCACCGCTCCCGGAAGCTGCACCAGCAGTACTGCCTGGCCCGCCGGCGCATCATCGGGTTCCAGGCCCGCTGCCGGGCCTACCTGGTACGCAAGGCCTTCCGCCACCGCCTCTGGGCCGTGATCACCGTGCAGGCCTACGCCCGGGGCATGATCGCCCGCAGGCTGCACCGGCGCCTCAGGGCCGAG
Seq A exon
GTGAGGGGCCCAGTCCACAAGAACCCCTGGCTCTAGGTCCTCCAAGGGGTGCCGCTGCACCTCAGGCAGACAAATCATCCCGCATGTGGCCTGAGCCCATCGCAGGGGGTGAGGCGGGGAGATGAAGGGCTCTCCCTCTGAAGGATGCACAAGACTGGACCCTCATTTCCCTCCTTCCAGTCAGGGGTAGGGCGGGGGTCCAGTCCCTCTTGTGAGTCTTTGGGAGGCCAAGGCGAACCTGCTTCGGCTTTGGGATCAAAGGTGCCCTCAACCCGCTGTGGGACCTGGAGGGTTTCTCGCATGCCTCAGTTTCCCTCTGCTAAATTATTTGGCAAAGTCATCCCCAGTCCTGGAACTCAAAGGGGGTGGGGTGGGGTCAAGCTGGCAGGGAGCACTGTGACAGCCACACACATGGTACGGTGCCCATCCTGCCACCTGCCTCCCCCAG
Seq C2 exon
TACCTGCGGCGCCTGGAGGCTGAGAAAATGCGGCTGGCAGAGGAGGAGAAGCTCCGGAAGGAGATGAGTGCCAAGAAGGCCAAGGAGGAGGCCGAACGCAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGGCTGGGCTTCCTG
R:
CTGATGTTTGCGTTCGGCCTC
Band lengths:
327-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development