GgaINT0104525 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192381645-192382103:-
Coord C1 exon
chr1:192381885-192382103
Coord A exon
chr1:192381753-192381884
Coord C2 exon
chr1:192381645-192381752
Length
132 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
CTCCTGTGTTTATTCCTCAGTAT
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATGCGTATTGGCTTCCTGAGACTGCAGGCCCTCTACCGATCCCGCAAACTCCACAAGCAGTACCACATGGCCCGCCGGCGCATCATCGAGTTCCAGGCCCGCTGCCGGGGCTACCTGGTCCGTAGGGCTTTCCGTCATCGCCTCTGGGCTGTCCTCACCGTGCAGGCCTACGCACGGGGCATGATAGCACGGAGGCTGTACAAGCGCCTCCGAGGAGAG
Seq A exon
GTACGTATTGTGGAGAGGATGGTAGTGGGAGACAGAGCTGGGGAGAGGGGGGACAAATAGTTTAAAGTGCACCAAAGAATCCTAGAAAGTAGGGAACATCTCTTGAGAAGGGCTCCTGTGTTTATTCCTCAG
Seq C2 exon
TATCATCGGCGCCTGGAAGCAGAGAAACTTCGGCTGGCAGAAGAGGAACGGCTCCGAAAGGAGATGAGTGCCAAGAAAGCCAAAGAGGAAGCAGAAAAGAAACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAAACTCCACAAGCAGTA
R:
TGGCACTCATCTCCTTTCGGA
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]