RnoINT0097378 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163028223-163028892:-
Coord C1 exon
chr1:163028674-163028892
Coord A exon
chr1:163028331-163028673
Coord C2 exon
chr1:163028223-163028330
Length
343 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACGACTGCTCCTTTCCTCAGTAC
3' ss Score
7.11
Exon sequences
Seq C1 exon
ATTCGTCTTGGCTTCCTGCGGTTGCAGGCCCTGCACCGCTCCCGGAAACTGCACAAACAGTACCGCCTGGCCAGACAGCGCATAATAAAGTTCCAGGCCCGCTGCCGGGCCTACCTGGTGCGCAGGGCCTTCCGCCACCGCCTCTGGGCCGTGATCACCGTGCAGGCCTATGCCCGGGGCATGATTGCGCGCCGGCTACACCGGCGCCTCCGAGTTGAG
Seq A exon
GTGAGAGGGTTTCTGAGCCTCAGGAGTGGGTGGTATCTAAGTGTGTGCTACCGCACGCAGGTATCTCCTGACCCCTGCCTGGTGCTGGCTGAGGAAGCCAAAGCCACAAAGGAGTCTTGGCATTGCCTGCAGGGGTGGACTAGAGACTGAGGCCCGGGTCTCTTGTGAATTTTAAGGAGACCGCACATTTGGCCTGGCTCTGGGATCCAATGAGCCCGACCCATTGCGACCAGGGGACCAACTCAACTGCCTTTTGGAGTTTGGGGGAGATGGGGGTGAGGTGAGGCAGAGCTGTGACAAGGGCTACATGTTTCTCTGGCCACACGACTGCTCCTTTCCTCAG
Seq C2 exon
TACTGGCGGCGCCTTGAGGCAGAGAGGATGCGGCTGGCAGAGGAGGAGAAGCTAAGAAAGGAGATGAGTGCCAAGAAGGCCAAGGAGGAGGCGGAGCGCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.546
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTCTTGGCTTCCTGCG
R:
CCTCCTCCTTGGCCTTCTTGG
Band lengths:
310-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]