MmuINT0104553 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105227306-105227940:-
Coord C1 exon
chr7:105227722-105227940
Coord A exon
chr7:105227414-105227721
Coord C2 exon
chr7:105227306-105227413
Length
308 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTGGCCATTCCTTTCCTCAGTAC
3' ss Score
5.87
Exon sequences
Seq C1 exon
ATTCGTCTTGGCTTCCTGCGGCTGCAGGCCCTGCACCGCTCCCGGAAGCTGCACAAGCAGTACCGCCTGGCCAGACAGCGCATAATAGAGTTCCAGGCCCGCTGCCGGGCCTATCTGGTGCGCAAGGCCTTCCGCCACCGCCTCTGGGCCGTGATCACCGTGCAGGCCTATGCCCGAGGCATGATTGCCCGCCGGCTACACCGCCGCCTCCGGGTTGAG
Seq A exon
GTGAGAGGGTTTCTGAGCCCCAAGAGTGGGTGTTGTCTAAGTGTGTACTACCCCACCCAGGTGTCTCCCAACCCTTGCATGGTTCTGGCTGAGGAAGGAAATCTTGGCATTGCCTGCAGGGATGGACTGAGGCCCAGTCCCTCGTGAATTTTAAGGAGACAGGCACATCTGGTCTGGCTCTGGATCCAATGAGACCGACCCACTGCAACCAGGAGACCAACTCAACTGTCTTTTGGAGCTTGGGGGAGATGGGGGAGGGGTGAGGCAGAGCTGTGGCGACTTGTTTCTCTGGCCATTCCTTTCCTCAG
Seq C2 exon
TACCAGCGGCGCCTCGAGGCAGAGAGGATGCGTCTGGCAGAGGAGGAGAAACTCCGAAAGGAGATGAGTGCCAAGAAGGCCAAAGAGGAGGCTGAGCGCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTCTTGGCTTCCTGCG
R:
GCGCTCAGCCTCCTCTTTG
Band lengths:
318-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: