DreINT0101074 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22246030-22248460:+
Coord C1 exon
chr21:22246030-22246248
Coord A exon
chr21:22246249-22248142
Coord C2 exon
chr21:22248143-22248460
Length
1894 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
AAAGTTTGTTCTCTGTTTAGCGG
3' ss Score
5.98
Exon sequences
Seq C1 exon
ATGCGTGTAGGTTTCTTGCGACTTCAGGCCTTGTACAGGTCACGGAAACTGCATCAGGAGTATCAGGCGACCAGGATACGTGTCACATTGCTGCAGGCCTGGTGTCGAGGACTCCTGGTACGGCGTACTTTTTCCAAACGCTTCCATGCGGTTCTGACAATCCAGGCTTATGCTCGAGGAATGATAGCACGGAGACAGTGCAAGAGACTCAGACTGGAG
Seq A exon
GTAAATCTTATGTCTGTCCATTCAACAATCCTCCATCCATCGTTTATAATATTCATCTGTCCATCTAAGTATCTAAACATCCATCTGTTTATTCATCCATACATTTGTCCATCTGTCTATTAGTCTGTCAAGTCCATTTATTCATCCATCTATCAATTTATTCATTTTATCCATCCATCAATCATCCGTCCACCCACCATCATACATCTATTGATCTATTTATATATTCATCCATCCATCCACCTATCTGTGTATTCCTCTATCCATCTATGTATTGATCTCTCTCCATTTATCCAACTATTCATTCATTTGTTTGTCCATCCATCTTTCAGTCTGCCTATCAATCTAAACGTCTATCCATCATCTGTTTATCTCTCCATCTATTTGTCCTGCCATCAGTCTGATTAGCCATCCATCCAAACATCCATCAATCCATCCATTAATATTTGATCCATATATTTATTCATCTGTTTTCATCTACATATTCATTTATCGATCGTTCTATGCATCCATTCATCTGTCCATTAATTAGTCAACCTTTTTATCCACCTATACATCAATCATCAGACAATCCACCCATTGACCCATCAATCTTTTTTACATCCATCTATTTATTTATCCTTCTATGCATTTGATTATCCATCCATTCATTTGTCAGCCTATCTGTCTATCCATTTATCCATTTAACTACCTATCCATTTATCAATCGTTCTATGCTTTTATTTATCTGTCCATTAACCAATCAACTTTTCTATCAATCAGTACATCAATCTATACTGTAAGTCTATCCATCCATCAGTCCATCCATAGTTTTTTCATCCTTCTGTTTATTTATCTTTCTATGCATTCCTCCATTCACCCTGTTGTAAATCAGTCTATCAATCCATCTATCCATTAATGATTACACTTCATTTAAGTCTCAATTTACAGTATTAATCTTAATAAACTACTAATTAGCTGTTTATTACTAGTTTGTAGGGTAGGTGTTTTAGGTTTTGGGTAGAATTAGGAATGCAGAATAAAATCATACTTTATAACTACTAATGAACAGTTAATATCTCAATGCTAGGCATGTAATAAGCCAGTAGTTAATAGCATGAATTGTGACCTAAACTCAAAGCAGGGTGCGAGTTATACATTATACCGGGGAGGGGTCTCAAGTTTTTCGGCTATGTTTGGTAATATGTTAAAACATTGAGTTGTTCCCAATGATATTTGTGATATTAAGTAAATTTGACAGAAAAAGTGACAGATTTGCTTTCCTGCACCTATTAATGGATAACCATGAAAGACTGCACATATTTTTAATTTTACTGTTTAACTTCCATGTGTGAGCCAGTGTATAATAAAATACAAACTATGCATCTATATTTACAGACACCCACAAACACCTTTTTTAAAGAAACATGTTTTTTAAACCCTTACACTGTCTGTTGATGCTCTAGATTTGTTTCAAACTGATGAATTAATGTTTTTGAGGCAAACATGCATTCACAATGGTATGAACCATTATAGCGGTGTTCAACTGTACATTGAAATTGTCTATTATTTCAATTATTAATATTATTTAAGAAGCAGATCAGAGCAAACTATTTCTTAACTATTAAAGGGCAGACCCCTCATACATCTTGTTTTGATGTCCTTCAGGTTGGGTCAATCGTTAATTAGGGGGGTTGGACCCCCCAAACCCATTACCCATTAATGAGTATATCTATTCATGTGTCTATCCATCCACACATCCATTCATCCATACATCTCTGTGTCCATCCATTGATCTCTCTATCTATCCATCACCTGTCCATCAATCAAACAAGCCACCATTCAAAGTTTGTTATAATAAACCCTTGAATCTGTATATTTATTTGTGCAGAATTAAAGTTTGTTCTCTGTTTAG
Seq C2 exon
CGGGATCGTCGGTTAGAAGCGGAGCGGCAGCGTCTGGCTGAAGAGGAGCGTCTGAAAAACCAGATGACGGCGCGCAGGGCTCGGGCTGAGGCAGCCAGGAAGCATCAGGAGCGCCTGGCGCAGCTCGACCGAGAGCAGGAGGAGAGAGAGCTGGCAGAGCGCAACGAGACACGGAGGAAAAAAGAGCTTCTAGAGCAGATGGAGAGAGAAAAAAAGGAGCCAGTAAATGACTCCGACATGGTGGACAAGATGTTCGGATTCCTGGGCAATGCCAATTCCCTTCCCAACCTGGAGGGTGAAGCACCAGAAGGGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.787
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=27.4)
A:
NA
C2:
PF125723=DUF3752=PU(74.2=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGGTTCTGACAATCCA
R:
CATTGCCCAGGAATCCGAACA
Band lengths:
347-2241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]