HsaINT0108937 @ hg19
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:7606]
Coordinates
chr11:76890781-76891527:+
Coord C1 exon
chr11:76890781-76890999
Coord A exon
chr11:76891000-76891419
Coord C2 exon
chr11:76891420-76891527
Length
420 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGGATGCCCCCTTCCCTCAGTAT
3' ss Score
7.15
Exon sequences
Seq C1 exon
ATGCGTCTGGGCTTCCTGCGGCTGCAGGCCCTGCACCGCTCCCGGAAGCTGCACCAGCAGTACCGCCTGGCCCGCCAGCGCATCATCCAGTTCCAGGCCCGCTGCCGCGCCTATCTGGTGCGCAAGGCCTTCCGCCACCGCCTCTGGGCTGTGCTCACCGTGCAGGCCTATGCCCGGGGCATGATCGCCCGCAGGCTGCACCAACGCCTCAGGGCTGAG
Seq A exon
GTGAGGGAGCAAGTCCATAGCACCCACAGCTCTGACCCCTGGGCGAGGAGTGTCCATGCATCACCCTCAGGTGTTGGCCAGGAAGTGGGACCTATAGGGGGGACCTGCAGTTATGCCTGCTCTGAGGAGTGCACATACCTGGGACCAGACCCTCATTTCCATCCTCTCAGCCAAGGGCAGGGCTGGGACCTCAGTCACTCTTGGGAATCTCTGGGAGACCGACGCAGATCTGGCCGGGCTTTAGGATCAGTGGTGCCTCCAGCCCGCTGGGTGACCTAGAGAATTTCTTGATTACCTCACTTGTCCTATCAAAGTCATGCCCAGTTCCAGAACTCAGAGTTGGGTGGGTGGAGCTGGTGGGAATCCCTGCAACAACAGCTACACACATTTCCATGCCCTCTGGATGCCCCCTTCCCTCAG
Seq C2 exon
TATCTGTGGCGCCTCGAGGCTGAGAAAATGCGGCTGGCGGAGGAAGAGAAGCTTCGGAAGGAGATGAGCGCCAAGAAGGCCAAGGAGGAGGCCGAGCGCAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474-MYO7A:NM_001127179:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=28.8),PF0061222=IQ=WD(100=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGTCTGGGCTTCCTGC
R:
CTGATGCTTGCGCTCGGC
Band lengths:
327-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)