HsaINT0115006 @ hg38
Intron Retention
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137433750-137434079:+
Coord C1 exon
chr9:137433750-137433864
Coord A exon
chr9:137433865-137433964
Coord C2 exon
chr9:137433965-137434079
Length
100 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
AGCCCACTCTCCTGCCTCAGGGA
3' ss Score
7.31
Exon sequences
Seq C1 exon
TTACCTAGCCCCAGGTGAGGACGGGCACTGGGTCCCCATCCCCGAGGAGGAGTCGCTGCAGAGGGCCTGGCAGGACGCAGCTGCCTGCCCCAGGGGGCTGCAGCTGCAGTGCAGG
Seq A exon
GTGAGCCAAGGGCGAGGCAGGGGCAGGGGCACCCTGAGGGGCGGTGGAGGCCCCTCCTCCCAGTGCCCGGCCCGACCTGCAGCCCACTCTCCTGCCTCAG
Seq C2 exon
GGAGCCGGGGGTCGGCCGGTCCTCTACCAGGTGGTGGCCCAGCACAGCTACTCCGCCCAGGGGCCAGAGGACCTGGGCTTCCGACAGGGGGACACGGTGGACGTCCTGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747:ENST00000341349:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0056419=PB1=FE(46.9=100)
A:
NA
C2:
PF0056419=PB1=PD(1.2=2.6),PF0001823=SH3_1=PU(50.9=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTAGCCCCAGGTGAGGA
R:
CTTCACACAGGACGTCCACC
Band lengths:
230-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development