MmuINT0109921 @ mm10
Intron Retention
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25085973-25086300:-
Coord C1 exon
chr2:25086186-25086300
Coord A exon
chr2:25086088-25086185
Coord C2 exon
chr2:25085973-25086087
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCCTACCCTTCTGTTACAGGGG
3' ss Score
8.02
Exon sequences
Seq C1 exon
TTACAAAGCCCCAGGAGAGGAGAGATCCTGGATTCCCATCTCCACGGAGGAGTCCCTGCAGAGTATATGGAGGAATGTGCCCGTGGGCCCAGGAGGGTTGCAGCTCCAGTGCCAG
Seq A exon
GTGAGCCAAGGGGAGAGACCATGATGCCTGCTGTGGGCATCCCAGACAGTTGGAAGAGAAGCCCCTCTGCTGCCCCTAAGCCTACCCTTCTGTTACAG
Seq C2 exon
GGGGTCTGGGGCCGGCCAGTCCTCTACCAAGTAGTAGCTCAGTACAACTATCGTGCCCAAAGACCGGAGGATTTGGACTTCCACCAAGGGGACACGGTGGATGTCCTGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805:ENSMUST00000044018:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056419=PB1=FE(46.9=100)
A:
NA
C2:
PF0056419=PB1=PD(1.2=2.6),PF0001823=SH3_1=PU(58.7=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCCATCTCCACGGAGGA
R:
TGGAAGTCCAAATCCTCCGGT
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types