RnoINT0102395 @ rn6
Intron Retention
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2299973-2300304:-
Coord C1 exon
chr3:2300190-2300304
Coord A exon
chr3:2300088-2300189
Coord C2 exon
chr3:2299973-2300087
Length
102 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
AGCCCACTCTTCTATTACAGGGG
3' ss Score
8.23
Exon sequences
Seq C1 exon
CTACAAAGCCCGAGGAGAGGACAGAGCCTGGGTCCCCATCTCCACGGAGGACTCACTGCAGAGTGTATGGAGGAATGTGCCAGTGAGCCCAAGAGGCTTGCAGCTCCAGTGCCGG
Seq A exon
GTGAGCCAAGGGGAGAGACTGGTGCCTGCTGTGGGCAGCCCAGGCAGTTGGAAGGGAAGCCCCTCGAGTGCACTGCCCCTGCAGCCCACTCTTCTATTACAG
Seq C2 exon
GGGGCCTGGGGCCGGCCAGTCCTCTACCAAGTGGTAGCTCAGTACGACTATCGTGCCCAAAGGCCGGAGGACTTGGACTTCCGCCAAGGGGACACAGTGGATGTTCTGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286:ENSRNOT00000012375:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056419=PB1=FE(46.9=100)
A:
NA
C2:
PF0056419=PB1=PD(1.2=2.6),PF0001823=SH3_1=PU(58.7=69.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAAGCCCGAGGAGAGGA
R:
CTTCACACAGAACATCCACTGT
Band lengths:
230-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]