HsaINT0117828 @ hg19
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131223221-131231632:+
Coord C1 exon
chr9:131223221-131223346
Coord A exon
chr9:131223347-131231461
Coord C2 exon
chr9:131231462-131231632
Length
8115 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TTCTCCCTCCTCTACATCAGAAT
3' ss Score
6.38
Exon sequences
Seq C1 exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGAG
Seq A exon
GTAGGCTCACCCTTGCCCAGGCTTTTCTTCTCGGACTGCTCAGATCCTAGCAGGCCTCAGCCTCGGTATGATTCAGGGTCAGCTATAGCTACTGGAATGTCCTAACAGACCCCATTTACTGAGGGCCTTGCTAAACCCTGAAACTATGTGAATCTTCTTGAGTTCTTATGATACTGCTGTGTGGGAAGTCCTGCTGTCCAAAGGCAGAGATGAGGAACCAGACCTCAGAGAGAAGTGATTTTCCCAGAGTCACAGAGAAGTTAGCAGAGCTGGAGTTAAGATTCATTCTAGAGGCAGTACTCTTAGCCTCTCTGCTTTGCTTGTGAGGAGCCACATCACATGTATTTTCTTTTCTTTTCTTTTCTTTTTGAGACAGAGCCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCATTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCAGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGCCCGCCACCACTTACGTCTGATTTTTAAATTTTTAGTAGAGATGGGGTTTCATCGTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAGGTGTTGGGATTACAGGCGTGAGCCACCACAGCCAGCCTATTTTTCTTATAGTTTATTACATTAGAAATCTTTCATACCAGCAGTGAAAAGAAAAAAAAATAGAAATGAAAAACAAAAGTAACTCCTTGAAGTTTATAGTCATACCTCATAAAACTATGTCAAAACTGACTCCTTGATTTACCAGACAAAGGAGACTCCTTTCCCTTAGAGACAAAGGGAGTATGGGGCTTTCTTAGGATTAAATGGAAACTGCTCTGACCAGTACAATAAATTAAAAGGATTGAAATTAGACTGCTGCCTTACATTTTTTACTACATATACTTCACTAATAATCAGTGAAATGTAAATTAAAAGCCACAGTATATTTTTTTTAAAACAAAAACAATGAGCTTTTTTCTTGAATGGAAAAAGTTTAAAAAATGACAACTATCTCCTGCCAGCAAGCATATGGGATATCAATGAATCTTTTTTTTTTTTTTCCGAAATGGAGTTTCGCTCTTGTTGCCCTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACCACAACCTCCGCCTCCTGGGTCAAGCGATTCTCCTGCCTCAGCCTGCTGAGTAGCTAGGATTACAGGCATGCACCACCATCCCGGCTAGTTTTGTATTTTTAGTAGAGATAGGGTTTGTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCAGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCGGCCCGAATCTTTTAAAACGTTTTTTATAGGACTGTGAACCTGATTCAGCTGTTCTGGAGTCAGTTTGGCAGGACTTGTCTAAACATTGATTCTGTAATTTTTCGTCTAGGAAGTTGTCCTAAAAACATCATAGAAGAGTACAGGGATTTTGTTTTTTTGTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCCCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAAGTGCCCGCCACCATGCCCGGCTAATTTTTTATGGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCTACCTCAGCCTCCCAAAGTGCTGGGATTACAAGTACAGGGATTTTTTGTAGATTTTTTGCTGTAGCATTGTTTGTAACAGAAAAATTGGAAGCAACCTAAATGTCCATCAGGAGAGTGTTGGTTAAATTATAATACATCTGGCTGGGCGTGGTGGGCTCACACCTGTAATCCCAACACTTTTAGGAGGCCCAGGAGGGAGGATCGCTTGGGCCCAGGAGTTTGAGATCAGCCTGGGCAACATAGTGAGATCCTATCTCTACAAAAAATAGAAAACTAGTTGGGTGTGGTGGCATGCGCTTGTAATTCCAGCTACTCAGAAGGCTGAGGTGGGAGGATCACTTGAGCCAGGGAGGTTAAGGCTGCAGTGAGCCATGATCATGCCACTGCATAGCCTGTGTGACACAGTGAGACCCTGTCTCAAACAAAACAAAACAAAAGAGAAATATGATACATCCATACAATGGAATACCATGCAGCCTTGCAAAGACTGAGGTAGAGGCTGGTTGCCGTGGCTTATACCTGTGATCCCAGCACTTTGGGAGGCCAAAGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACACGACGAGACCCTGCCTCTACAAAAGATAAAAAATTAGCTGGGTGCAGTGGTACGCACTTGTAGTCCTACTTACTTGGAGGGGAGGTTGAGATTTCAGTAAGCTGTGATTATGTCACTGCACTGCAGCCTGGATTACAGAAAAGGACCCTGTCTCAAAAACAAAAAGATTGAGACAGATATTTATGCATGATAATGAAGCATGGAGATGCACAACATATAACATTTGGCCGGCCCTATTTGTGCAGAAAATGGGCGTCTGTGTCCATGTATAAACGCATATGTTTGTATGTGCAGAACGTTTTCTGGGAGAATATGTTTATATCTACAGAACGTTTTCTAGGAGAATATGCAAGTAGTGGTAAGCAGTGATTGCCTCTGAGGTATGGCAAGGTTTAATGCTTTATTTTTATTTATTTATTTACTTTTTGAGAAAGAGTCTCGTTTTGTCACCCAGGCTGGAGTGCAGTGACGCAATCTCGGCTCACTGCAACCTCCACCTCCTGGGTACAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCACGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTAACCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATAACAGGTGTGAGCCACCACCACGCACAGCCAAAAATGCCTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCATCCAGTCTGGAGTGCAATGGTGCAATCTCGGCTCACTACAACCTCCATTTCCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCGAGTAACTGGGACTACAGGCGTGCACCACCACGCCTGGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTCTTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCCAAAAATGCCTTTTAAAAAAATAAAAAGCCTTGGTAGTTTGGGTTTTTTTGTTTTTGTTTTTTTGAGACGGAGTCTTGTTCTGTTGCCCAGGCTAGAGTTCAGTGGCATGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCTGAGTTAGCTGGGACTCAGGCATGCACCACCACACCCAGCTAGTTTTTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTTGAACTCCTGACCTCAAGTGATCTGCTCGCCTTGGCCTCCCAAAGTGCTGGTATTACAGGCGTGAGCCACTGTGCCTGGCCTCCTTGGTAGTTTTCAAAGTACACATCACAGAGATGCTGCTATGAAAAATTTTCCTGTTGACATGGGTTGCTAGGGGTAATAATCCCCTCTGAAAAGCATAATGCCACTTCCAGCCCCATTGCCAAATCCTAGAGGTGGAAGGTCCCAGAGAGGTGGCCTGCCCAGGTTCTCTCAGCACCTGAAACAGTAGCTGTCTTTTCTGCTTTCATTCTTGTGTCTGCCCCTTTCCACTTGCCAGTGGCTTCCTGTGGCCCTGAGAGGCCCTAACTCAACCCTGTCCTTCATGGACGGAAGGGGAACAGCCCCTGGAGGTGGAAGTTTGAGGAAGATATGGAAATGAAGACCAAAAGCTGCTGTATGCATGTGGGGTTCTTGTTTGATATCTTACAACTCCTGGAATATAAGATCAGCTTTGGGAGAAAGAAGGTCTAGGTTTTTTTCTTGCCTCTATTACTAAAAGTGATCAGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCCAACGTGGTGAAACCCCATCTCAACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACGCTCCTGTAGGCCCAGCCATTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCTGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGTGATCTATTTTTATTTAGGGAAATTTGAAAATACAGAAAAATAATCAGCTACTCAATTCTGGCTGCTATTAAGTTTCAAAATTTCTTGTTGAAAAGTACAGGCCCAGGAGCAATGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAAATCAACTGAGATCAGGAGTTTGAGACCAGCCTAGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTACCCTGGCGTGGTGGTCGCGCCACCAATATCAGCTACACAGAAGGCTGAGGCAAGAGAATTGCTTAAGCCCATGAGGCGGAGGTTGCAGGGAGCCAAGATCGCGCCCCTGCACTGCAGCCTGGGCAACAAAGCGAGTCTCCATCTCAAAAAAAAAACAAAAAAAACGGAAAAGAAAAACGAAAAGAGGACTGGCCGGGCCTGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGCAGGCGGTTCACCTGAGCTCAGGAGTTGGAGACCAGCTTGGACAATGTGACGAAACCGTATCTCTACCAAAAATACAAAAAATTAGCCCAGTGTGGTGGTGTGCACTTGTGGTCCCAGCTACTTGGGAGGCTGAGGTGTAAGGATGGGTTGAGCCTGGGAGGCAGAGGTTGCAGTGAACCAAAGTTGTGCTACTGCACTCCAGGCTGCTTGACAGAGTGAGACCCCATCTCAAAAAAAAAAAAAATGGAAAAGTGCAGGGATGTACACCCATCAGAAGTGTATTGCTCCATGAATTTTCACAAGCTGAAGGTACCTGTGTAACGATCACCCAGCATCCTAGAAGCTGCCCCTGGCTTTTGTCTATGTCACTCCCTCCCCATCACAAGGAGTAAGTAGTCACACTTTCCCATATATATATATATATATATATTTGTCATTTTAAAAAATATATAGTCATGTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACTCCGTCTCTACTAAAAGTACAAAAAATTAGCCGGGCATGGTGGCGGGCACCTGTAGTCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATAGTCATATATCAATTAACAATGGGGATATATTCTGAGAAACATGTTGTTAGGCACTTTCATCATTGTGCAAACATCATGGAGTGTACTTACACAAACCGAGATTGGTAAAGCCTGCTACACACCTGGGCTGTATGGTATAGCCTATTGCTCCTAGGCTACAGACCTCTACAGCATGATGCCGTACAGAATACTGTAGGCAACTAACACAATGGTAAGTATTTGCATATTGAAACATAGTAAATATAGAAAAGGTACGGTAAAAATACGGTGTTTTGGGACCACTGTCATATATGCAGTCCATTGCTGACTGAAATGTTACGTGGCACATGACTGTTTATACATTTTCCTATTTTTGTCATTTTAAGTATTAAAAGTAACTTCTTTTCTTCTAAAAGTAATATACATACCTGGATGTGGTGGCTCATACCTGAAATCCCAGCACTTTGGGAGGCCAAGACGGGCTTATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCACCTCTACTAAAAATACAAAAATCAGCTGGGCATGGTGGTAGGTGCCTGTTATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATGGCACTACTGCACTCCAGCCTAGGCGATGGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAGCAAAGTGTTTACAGCTTTGCATAAAGTTTCCTGAAGCATATATGCATTTTAAAATATTTAAAAAAATATTTAAAAAGCTGAGACTACAGGCACCTGCTACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGACACGGGGTTTCAGTGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCTGGCCCTAAAATATTTTTTATACTGACGTATTTAAAAAGTATTGTATTTTTTTAATACAATACTTTCCAGGTATTGTACCATGTGCATTTATAATATTTTTCTACATCATCAAAATAACTGATTACTCCTAAGAGCATTTCTTAATATCATACAATATCTGGTCCTTTTTCCAATTTACCCACTTGTTTCTACAATACCTTTTCAGCAGATTCATCTACCTTTGTAACTAATCCACTATCAGCTATTCATATTCATTTAAAAGACTTTTGACATATTTCATTTCTACCCTAGGTATAAAAAAATGTACTGCCCTAAACTTTTGCCAACTTTGGGTATTATTAATGTTTTTGCTGATTTGTTATATTATTTCTTTATGAGTATTGTTATTTTTAGAGACAGGGTTTCGCTCTGTCACCCAGGCTGGCATGCAGTGGTGCTATCATAGCTCACTGCAGCCTTGAACTCCTGGACTCAAGGAATCCCCTGCCTCAGCCTCCTGATTAGTTGAGATCACAGGCATGTGCCACTACACCCACCTGATTTTTTTTTTTAGAAGGAGTTTCGTTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTTGGCTCACTGCAACCTCTACCTCCCGGGTTCAAGCGATCCTCCAGCCTTAGCCTCCTGAATAGCTGAGATTACAGGCATGCACCACCATGTCCAGCTAAGTTTGTGTTTTTAGTAGAGACGGGGTTTCACCGTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCTGGTCATCCACCCGCCTCAGCCTCCCAAAGCGCTGGGATTGCAGATGTGAGCCACCATGCCCAGCGCTAGCTAATTCTTTTACTTTTATAGAGACAAGGTCTCGCTATGTTGCTGAGGCTGGTTTTGGCTTCCCGCCTCGGCCTCCCAATATACTGGTTTTACAGGGTATCCAGCCTATGTTCTTTATTTTAAACTTAACATTGTAGCCCAAGCTTTTAATTTTGATGTTGGGAATTCTCCAAAACCATCATTTAAACATGGATAGGTAATGTTCCATCACAAGGGTTCAGAGTATGTTCTTCCTGGGGTCCCCGAGTTAGCTGTTACAGCTTTTCCCGTCTAATCAGTAAATAAGCCTCCAGTGGTGGAACTCGTGGTCAAGGTTCTGCCTTCTGAGTTCATGTGTTTCTCCCTCCTCTACATCAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-ODF2:NM_153436:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(11.4=100),PF134761=AAA_23=FE(13.8=100)
A:
NA
C2:
PF041569=IncA=FE(29.0=100),PF104734=CENP-F_leu_zip=PU(24.0=43.9),PF0149614=V_ATPase_I=PU(22.2=49.1),PF041117=APG6=PU(27.2=64.9),PF134761=AAA_23=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)