MmuINT0112710 @ mm9
Intron Retention
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29748964-29756767:+
Coord C1 exon
chr2:29748964-29749089
Coord A exon
chr2:29749090-29756596
Coord C2 exon
chr2:29756597-29756767
Length
7507 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTTTCACTCCTTTGCATCAGAAT
3' ss Score
6.75
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAG
Seq A exon
GTAGGCTCAGTCTTGTTCAGGCTGCTCTTCTTGGACTGGTCAGTCAGATTCTAGCAGGCCTCAGACTTGGTATGATTGCAGAGATTCCAGTGAGCCTCATTGACTGGGTGCCTTTGTAAACCCTGTAACTTATGGCACCACTTAGCCTCTTGCAGCTTTGCTGGGTGGTAGATCCTGCTGTTCCACTGTAGACATGAAACAGCTGGGAGCTGACATGCCCGGAGTCTTACAGAGAGAGCAGCAGAACTGGAGTTAGGACGCTGTCTCATTTTGGAGACTGAACTCAGCCTCTGCTTTGCACATAGATTTACATGTCTGTCATAGTATCTGAAGTATAATTAACATGGAGGATGTTTACGTGTGCATGTGTACATAAACCAACCTATAAAATAGCCAAGAAAATGTTGCTGGCCATATAGATGATGCAAGCATTTATCCACACTGCTTTGGAACAAATGGAGTATCTTCAGTATTAATACCCAAGATACTGTGTCTTATGCTATATCTTAACAGTGTTTATCCATGTACCTGCTCAATCACTCACCAACTCATCCACCCACTCATCCATCCATCCATCCATCCATTCACCCACTCATCCATCTGTCCATCCATCCACCTCCAGCCTTAATAAGCCATCCATATAATGAATCACACACGGTACATTTCTTGGGCTTGCCCCGCATTGTCAGCACGGGTTCTAGCTACAAGCCTGCCAAGACATGTTCTTTGTCAGGTGTGGTGGCACACGCCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGGCAGATTTTTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCATCTCAAAAAAACATCTCAAAAAAAAAAAAAAAAAAAAGAAGCTAAAATAGTTTTCAATTCTGTTCTGAACAAACTCCTTCCTTAATCAGTAGAAGTAAAGACTTCAAAATAATGCTTCGGTGTGTTGCCAACACCTTTAATTCCAGCACACGACACTTGGGAGGCACAAGCAAGCAGGTGGCTCTCTGAGTTCAAAGCCAGCCTGGTCTACTCAGCAAATTCCAGGCCAGCCAGGGTTAACATGGCGATATCTTGACTCATACAAAACAAAACTTGCTTAGCCTGCTCTTTTAGAGTCAGTCTTTTTCTTATAGTTGCTACTCTGAAAACGAGAAACCCCCAAGATGGATGTAATTGTGACATTCATAATCATCCATGGATTTGCAGTTCATTCCCAGGGAACCTGGGTACGCTCCGAAGTGCACGGAACGCGTTATGAGCAGTATAAAGCACAGGAAGATGGGCATCTCCGCCCGGGGGTGTAGCTGACTTGAGTGTATGCTTAGCAAGGCCTTGGGTTGGTTCAGTGCCCTATATTGCTTGCCTTCCTGAAAGGCACTGGGTCCTCAAAAGAAGGCTGAAATAAAAATGCTCCCTTAATATTATTTTATTACCTCAGTAGTAACCATTGAAAAGTAAAATTTCTGAGCATGGTTGTACACTTCTTGAATTCTAGCAGTCAGGAGGCAGAGGTAGGAGAATCCCTGTGGGTGTGAGGCCACCCTGGTCTACAAAGTAAGTCCAGGATAGCCAGGGCTTGTTACACAGAGAAACCATGTCTCAAAAAACCAACTGACCAACCAACCAAAAGAAAAAAAAAACATTTGAAACATCATGGTGAATGCCTATAATCCCAGCTTTTGGGAGGTTGAAGCAGGAGGATTGCTAAGAATTAGAGGCCAGCTAGAACTTAGTGAGGCTTTGTTTCGAAATCAAAAATAAAGAAATTGGAACACAAATAGCAAGGCATCACTCATTTTTATTGAATGGGAAGGAGTTTAGAGAGGTGCTCAGGGGTTAAGATCACTGACTGTCTTTGCAGAAGACCTGGGTTCGATCCCAGCACCCATATGTCGCCTCATGTCCCTACTCAAGCTATACTGCTTTCTCTCATGTGACACCCTCATCTGGCCTTTGCATGTATGAGGCACACACATGTTGCACAGACATACAAGCAGGCAAAACATGCATGCACATAAACTAAAAATCAGTAAATCATTTAGGCAGTGGTGTTGTGAGCCTTTAATCCCAGCACTCGGGAGGTAGAGTCAGGTGGATCTCAGAGCTTGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGATAGCCAAGACCACAGAGAAACCCTGCTTCTAAATAAGTAAATAAACAAATAACTAAATTTTTTTTTAAAGATTTATTTATTGATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGAATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGTGCTCTTACCCACTGAGCCATCTCTCCAGCCCAAATAACTAAATTTTTAAAAAATTAAAAAAAAAAAAATTTTAGAACAGAAAGAGGGTAAAAGATTACAATTATCCCATGTCACCAGGCACACTGATAACAAGTTTTTGAGACATTGTTGCTGTTGAGACAGGGTCTCAGGTAGCTTAGGCTGGCTTCAAATTTGCTATTTAGTTGAGGATGTACCACTTGTGTGCCTCATGTCCATGGAGGCCTGTAAAGGGCATCAGCTTTCCTGGCACCGGAGTTACAGATGGTGCCTGTAACCTGGTAGATGGTAATGTGCTAGCTTGTGAGCTGCATGTGGTGCTGGCATCAATCTGGTCCCTCAGGAAGAGCAGCCAGTGTGCTTAACCAGGGAACTGTTGCTCCAGCCCCAGTGTTTATTTCTATATATGTATTAAGCAGCTAGTGCTCTTAAGCACAGAACCATCACTCTAGCCTCAGGGTTTATTTTTATATATGCATTTGTGGGAGTGGACTTTAAATCGGGTGCCCTAGGTTCTCAGAGGCTTTGCATTGTCCTGGACTCGGACAATGGCTGTTGCTCCGAATCAGCTGAACATGGGTACTGACAACTGAATGCCAGTTCTCTACAAGAACAGGTTACCTTCTTCATGCTGAGCTGTCTCTCTTACTCCATCAGATCTTTTCAAGTTTTACTTTCTGAGACAGGGTCTTTTTGATTATCCCTGGTTGGCTTAAAACTCACTGTGTACCTCATACTGGCCTCACATTCAGAGATCTGCCTGCCTCTGTTGAGACCCCTGGCATTTACCATCATCCCTGACCTCCCAGCACCCCCCTCCTTTTTTTTGAGACAAGGTCTTTATTATTAGGTAGTTCTCTCACTGTCCTGAAATTCACAGTGTAGACCATGCTGGCCTTGAATTCCCAGAGCTCTACCTACCCTCTGCTTCAAGAGTGCTGAGGTAAATGCCTGTGCCACCACACCTAGCTCCTGCCCTTTTTAAAAATTAAAAAGATGTATGTCTAGCAACTGAGCCTACATCTCTAGCCTATTTCTAGATAGCTTAAAAATCACATATATTTATTTGTATGTGCAGGTACATGCAGGTCAGAGAGTAACTTGGTTCTGCCCTTTAACTTACTGTGTAGAGTTTGGCTGTATTTGCATAGAAGCCATGTGTCTGAACTTATGTGCATGCACAGCTAATTCACAAGTGCTAGGAGGGTCTGTAAGCTGTGGTGAGTGCGGCTTACCTCCCAGCATGGCATATGTTTCCTTTTGTTTTCTGAGACAGCCCCATGTTGTCCCAGCTGGTCTTGAAGTCTCTGTAGAGCTGAGACTGGCCTAGAACTGATCTTTCTGTCTCCACATCCAAGTTGCTAGGATTCCGGGCACCAGCCAGCACACCCAGCTTCCATCTCTGCTATGCTTTACTATACTATATATTTAGCTTTTGCTCCTGAGGATTGAATCCGGGTTTTTACTACTGTTTTATTTTTCTGTTGTGTTCAAATTCTGTTTATTTAATTATTTTGAGATGTCTCACTATGCAGCTCTAATTGGCCTGGCATTCTTTATAAAGACCAGCTGGTTTTCTACTCAGCAATCACCTGCCATGCCTGGCAAAGTTCCTGTTAACAAGCATCATATATTATACTACGTTTCCTTTGTTTGTTTTGCTTTTTGAGAAAGGATCTCAATGTAGTCTAGGCTCTCCTGGAACTCACTATGTCAGTCCCCTGCATCTGCCTGCTGAGTGCTGGAGTTGAAGGTGTGTGCCACATGCCTAGCATGCATCATATTTTATGAAAAATAACTTTCTAGCTGGGCAGAAGTGACTCACACTGTTAACCCCAGTACTTGAGAGGCAGAGGCAGGCGGATCTCTGAGTTTGAGGTCAGCCTGGTCTACAGAGTGAGTTCTGAGACAGTCAAGACTACAGAGAGAAAGAAACTTTTTTTTTTCCTTTTCCTTTTTTCTTATTTTTTTCCAGAGTTGAGGACCAAACCCAGGGCCTTTCGCTTGCTAGGCAAGCGCTCTACCATTGAGCTAAATCCCCAACTCCAGAAACTGTTTCATAAAACAAAAAACAAAACAAACCCCCAAAAGCGTGAAGAGGCTTGTGCCTATTGTAGAGGTTCAGGTCTGTAATCCAAGCACTGAGGAGGCCATGGCAAGGAGATGGCTCTGAATGAGGCCAGCTCAGGCTCCAAGACACTGTGTCAGAAGAAAAAGGATCAAAGCATGTGAGGCATTGTCGCTCACAGCTGTGCTGTTGGCACACAGAAGTATGAGGCAGGAGGATTGCTGGCACACAGAAGTATGAGGCAGGTGGATTGTCAGAAGCTTGAGTCCATTCTGGGCTACACAGTAAAGTCAGGCCAGCCTGGATCCACCCACTTGCCTTGTCTGCCAAATGGTGGGTTATACCTATAATCCCTGTAATCTTTGCACTGGATAGTCTGGGCTCCTGCATGAGATCTTATTTAGAAAAACAAACAAGGTCTTACTCCCAGCACTTGGGAGACAGAGGTAGGTAGATCAGAGTTTGAGGCCAGCCTGGTCTATAGAGCCAGGAATTCTAGAAGCCAGGGCTCCCCAGAGAAACCCTGTCTCAAAAAACCAAACCAAAACAAAGGGTGGGGTAGGCCGGCAACAAGATGCTCTCTGTGTAAAAGAACCTGCAGCAGCCTGGTCTGATCCTGAGTTTAGTCCTTGGGACCCATGTGGTTGAAGGAGAGAGATGTTGCTGTGAGTGGCTGGTGAGATGGCTCAGTGGGTAAAGCTGTAGTCTGATCATTCAAGTCTGGTGACCTGAGCTAAATTCCTATAAATCATGGAGGGGTAAATATCAAGACCCAGCCTCAAAAAGTTTTCCTCTGACCTGCATGTGTACACCATGGCATGCACAAGTATAAATACATTCACACACACACACACACACACACACACACACACACACACACACAACTTAGAAAAAGAGAGATGCTGTGGAAGTGAACCCTTTTTTTTGCTGTAGGTTGCTGGGAGAAATAGTCCTTGCCCCCTTGCTTGGAAGCTTAATCCCAGAGATTTCCTGAGGTGTCTTGTTCAAGCTCTTCCCTGGAGTTCAAACTGCAGCTGTTTTTCCTGCTTTGTCTTGGGTCGGCCTCTGTCCCCTTTCTGGTGATGCCTACAAAGGCATGCTTTACATTTTAATTTTGACTCATGCTTTACATTTTAAGCAAAAGGGCAAGGTCCTACAGTTGGGATAGAGGTAGAAATACAGACCAGAGGCCACTATAGTTCCTGAGGGCACTTTATTTATTTATTTATTTCAGATTTTTTTATTTTATGTGTATGGGTGCTTTGTTTGCAATGTATGTATAAGCATGTGTGGTCACACAGGTCAGCAGAGAGCATCAGCTCCCCTGGATCAGATGGTTGTGAGCTACCATATTGATGCTGGAAATTGGACATCATCTACTGCTCTTGCAAAGGCACTAGGTTCAATGACCAGAATTGCAGTTCCAGGGCCATGCAGTGCCCATGGAGCTAAGGAAAGAAATCAGATCTCCTAGAACTGGAGTTACAGACAGTTGTGAGGCATCCTTTTTTTTTCTTTAAAGATTTATTTATTTAATATATATGGGTACACCACACCGATGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAAAGTCAGTGCCCCTAACCCCCGTGCCATCTCTCCAACCCAAGGCACATTTTCCTTAGGACTGTATAAGCTGTTTCTGTAACTTTTTTTTTTGTTTTTGCAGTGCTAGGGGTTAAAACACTTCCTTCGATGAGTTCTTGCTATGTTGCTCAGGCTGGGCTAAATCTATAGGCTCAAGTTTTGATCCTCCTGCCTCAAATTTTGCAGTAACTGTGACTAAAGATGTAGTGTTAATATTTATTTTATTTTGTTTCTGAGACAGGGTCTCATGAAGTTAGGGCTGATCTTGAACTTGCTCTATAGTGGAGGATAACCTTGAATTTATATGATCCTCCTGTCTCCACCTCTCAAGTGCTGGGATTCCAGGTGTGTGCCACCACTCCCAGCTGCTTACTTCGTGCTAGGGATTGAACCCAGGGCCATGTGTATGATAGGTCCTGAGCTATAGCCCCCGCTCTTTATCCTTCCTGTCTAATTTGGCATATATATGTTTATTCATGGCTGGCTTGGAACTCACTGTGTGGACCAAGCTGGCCTTGAATTCACAGAGATGCACCTGCCTCTGCCTCCTCAGTGGTTGGATTACAGAGTATATATGTGAGTGTGTGCATATATTTAAGGGAAACCAGGAGAGAGCATCAGGTTCCCTGGAATGGACTTATAGGTAGCGGGAGCCACCTGATGTCCTGGGAGCAGATTTGGTCCTCTGCAAAATTCAGTACACACTCTTAACTGCCAAGCCGTTACTCTCTTAAGTTTTATTTGATAGGTATTTTGCCCTAGTATATGTAAGGCACTGTATGTGTGTCTTGGAACGTAGAAGAGATAATGTCACATCTCTTCACATTTTGGAAACGGTTTCTCTGTGTAGCCCTGACTGTTCTGGGACTCTATAGACCAGGCTGGCCTTGAATTCACAGATCCTGAGTGCTGGGATTAAAAAGGCATGGCCACCACTTGCACCACCATGTGTTTGTTTGTTTCTTTTTCTCTTTTTTAAAAGGTTGAGTGTCTTTATGTTGCCTGATCTGATCTTGAACTCCTCTTCCAGAAGTCTCAGCCTCCCCAGTAGCTGGGACTATTCAGGCACACAGCACACAAACCTAGCCTTCTTTATAACTTAACATTCTAACCCATGCCTTTTTCAATGTTAGAAATTCTTCAAAACCATCATTTAGACTTGGGCAGGTAATGTTTCCTTCAGGAGGGTCTAGAGTGGTTGATTCCTGGGCAGGAGCTCTGGGTTGCCATTGCAGTGTGTCGGCTCTGCCAGTCACTTTGGCAGTCAGCAAAACTCCACAGAGCAAATAAGTACACTTCCGTCCGAGGCTTGGCCTTAGCAGCTTATCTATCTTTCACTCCTTTGCATCAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTAAGTGACCTTTCTACAGAAGACGACGATTCAGGTCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-Odf2:NM_001113213:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(26.9=43.1),PF0149614=V_ATPase_I=PU(17.3=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000028128, ENSMUSP00000049272, ENSMUSP00000109384, ENSMUSP00000109385, ENSMUSP00000109386, ENSMUSP00000109387, ENSMUSP00000109388, ENSMUSP00000109388f6171A, ENSMUSP00000109391, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000109395, ENSMUSP00000109396, ENSMUSP00000117628, ENSMUSP00000117887, ENSMUSP00000121207
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: