HsaINT1025576 @ hg38
Intron Retention
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128460942-128469470:+
Coord C1 exon
chr9:128460942-128461067
Coord A exon
chr9:128461068-128469182
Coord C2 exon
chr9:128469183-128469470
Length
8115 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TTCTCCCTCCTCTACATCAGAAT
3' ss Score
6.38
Exon sequences
Seq C1 exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGAG
Seq A exon
GTAGGCTCACCCTTGCCCAGGCTTTTCTTCTCGGACTGCTCAGATCCTAGCAGGCCTCAGCCTCGGTATGATTCAGGGTCAGCTATAGCTACTGGAATGTCCTAACAGACCCCATTTACTGAGGGCCTTGCTAAACCCTGAAACTATGTGAATCTTCTTGAGTTCTTATGATACTGCTGTGTGGGAAGTCCTGCTGTCCAAAGGCAGAGATGAGGAACCAGACCTCAGAGAGAAGTGATTTTCCCAGAGTCACAGAGAAGTTAGCAGAGCTGGAGTTAAGATTCATTCTAGAGGCAGTACTCTTAGCCTCTCTGCTTTGCTTGTGAGGAGCCACATCACATGTATTTTCTTTTCTTTTCTTTTCTTTTTGAGACAGAGCCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCATTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCAGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGCCCGCCACCACTTACGTCTGATTTTTAAATTTTTAGTAGAGATGGGGTTTCATCGTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAGGTGTTGGGATTACAGGCGTGAGCCACCACAGCCAGCCTATTTTTCTTATAGTTTATTACATTAGAAATCTTTCATACCAGCAGTGAAAAGAAAAAAAAATAGAAATGAAAAACAAAAGTAACTCCTTGAAGTTTATAGTCATACCTCATAAAACTATGTCAAAACTGACTCCTTGATTTACCAGACAAAGGAGACTCCTTTCCCTTAGAGACAAAGGGAGTATGGGGCTTTCTTAGGATTAAATGGAAACTGCTCTGACCAGTACAATAAATTAAAAGGATTGAAATTAGACTGCTGCCTTACATTTTTTACTACATATACTTCACTAATAATCAGTGAAATGTAAATTAAAAGCCACAGTATATTTTTTTTAAAACAAAAACAATGAGCTTTTTTCTTGAATGGAAAAAGTTTAAAAAATGACAACTATCTCCTGCCAGCAAGCATATGGGATATCAATGAATCTTTTTTTTTTTTTTCCGAAATGGAGTTTCGCTCTTGTTGCCCTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACCACAACCTCCGCCTCCTGGGTCAAGCGATTCTCCTGCCTCAGCCTGCTGAGTAGCTAGGATTACAGGCATGCACCACCATCCCGGCTAGTTTTGTATTTTTAGTAGAGATAGGGTTTGTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCAGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCGGCCCGAATCTTTTAAAACGTTTTTTATAGGACTGTGAACCTGATTCAGCTGTTCTGGAGTCAGTTTGGCAGGACTTGTCTAAACATTGATTCTGTAATTTTTCGTCTAGGAAGTTGTCCTAAAAACATCATAGAAGAGTACAGGGATTTTGTTTTTTTGTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCCCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAAGTGCCCGCCACCATGCCCGGCTAATTTTTTATGGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCTACCTCAGCCTCCCAAAGTGCTGGGATTACAAGTACAGGGATTTTTTGTAGATTTTTTGCTGTAGCATTGTTTGTAACAGAAAAATTGGAAGCAACCTAAATGTCCATCAGGAGAGTGTTGGTTAAATTATAATACATCTGGCTGGGCGTGGTGGGCTCACACCTGTAATCCCAACACTTTTAGGAGGCCCAGGAGGGAGGATCGCTTGGGCCCAGGAGTTTGAGATCAGCCTGGGCAACATAGTGAGATCCTATCTCTACAAAAAATAGAAAACTAGTTGGGTGTGGTGGCATGCGCTTGTAATTCCAGCTACTCAGAAGGCTGAGGTGGGAGGATCACTTGAGCCAGGGAGGTTAAGGCTGCAGTGAGCCATGATCATGCCACTGCATAGCCTGTGTGACACAGTGAGACCCTGTCTCAAACAAAACAAAACAAAAGAGAAATATGATACATCCATACAATGGAATACCATGCAGCCTTGCAAAGACTGAGGTAGAGGCTGGTTGCCGTGGCTTATACCTGTGATCCCAGCACTTTGGGAGGCCAAAGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACACGACGAGACCCTGCCTCTACAAAAGATAAAAAATTAGCTGGGTGCAGTGGTACGCACTTGTAGTCCTACTTACTTGGAGGGGAGGTTGAGATTTCAGTAAGCTGTGATTATGTCACTGCACTGCAGCCTGGATTACAGAAAAGGACCCTGTCTCAAAAACAAAAAGATTGAGACAGATATTTATGCATGATAATGAAGCATGGAGATGCACAACATATAACATTTGGCCGGCCCTATTTGTGCAGAAAATGGGCGTCTGTGTCCATGTATAAACGCATATGTTTGTATGTGCAGAACGTTTTCTGGGAGAATATGTTTATATCTACAGAACGTTTTCTAGGAGAATATGCAAGTAGTGGTAAGCAGTGATTGCCTCTGAGGTATGGCAAGGTTTAATGCTTTATTTTTATTTATTTATTTACTTTTTGAGAAAGAGTCTCGTTTTGTCACCCAGGCTGGAGTGCAGTGACGCAATCTCGGCTCACTGCAACCTCCACCTCCTGGGTACAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCACGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTAACCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATAACAGGTGTGAGCCACCACCACGCACAGCCAAAAATGCCTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCATCCAGTCTGGAGTGCAATGGTGCAATCTCGGCTCACTACAACCTCCATTTCCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCGAGTAACTGGGACTACAGGCGTGCACCACCACGCCTGGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTCTTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCCAAAAATGCCTTTTAAAAAAATAAAAAGCCTTGGTAGTTTGGGTTTTTTTGTTTTTGTTTTTTTGAGACGGAGTCTTGTTCTGTTGCCCAGGCTAGAGTTCAGTGGCATGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCTGAGTTAGCTGGGACTCAGGCATGCACCACCACACCCAGCTAGTTTTTGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTTGAACTCCTGACCTCAAGTGATCTGCTCGCCTTGGCCTCCCAAAGTGCTGGTATTACAGGCGTGAGCCACTGTGCCTGGCCTCCTTGGTAGTTTTCAAAGTACACATCACAGAGATGCTGCTATGAAAAATTTTCCTGTTGACATGGGTTGCTAGGGGTAATAATCCCCTCTGAAAAGCATAATGCCACTTCCAGCCCCATTGCCAAATCCTAGAGGTGGAAGGTCCCAGAGAGGTGGCCTGCCCAGGTTCTCTCAGCACCTGAAACAGTAGCTGTCTTTTCTGCTTTCATTCTTGTGTCTGCCCCTTTCCACTTGCCAGTGGCTTCCTGTGGCCCTGAGAGGCCCTAACTCAACCCTGTCCTTCATGGACGGAAGGGGAACAGCCCCTGGAGGTGGAAGTTTGAGGAAGATATGGAAATGAAGACCAAAAGCTGCTGTATGCATGTGGGGTTCTTGTTTGATATCTTACAACTCCTGGAATATAAGATCAGCTTTGGGAGAAAGAAGGTCTAGGTTTTTTTCTTGCCTCTATTACTAAAAGTGATCAGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCCAACGTGGTGAAACCCCATCTCAACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACGCTCCTGTAGGCCCAGCCATTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCTGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGTGATCTATTTTTATTTAGGGAAATTTGAAAATACAGAAAAATAATCAGCTACTCAATTCTGGCTGCTATTAAGTTTCAAAATTTCTTGTTGAAAAGTACAGGCCCAGGAGCAATGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAAATCAACTGAGATCAGGAGTTTGAGACCAGCCTAGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTACCCTGGCGTGGTGGTCGCGCCACCAATATCAGCTACACAGAAGGCTGAGGCAAGAGAATTGCTTAAGCCCATGAGGCGGAGGTTGCAGGGAGCCAAGATCGCGCCCCTGCACTGCAGCCTGGGCAACAAAGCGAGTCTCCATCTCAAAAAAAAAACAAAAAAAACGGAAAAGAAAAACGAAAAGAGGACTGGCCGGGCCTGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGCAGGCGGTTCACCTGAGCTCAGGAGTTGGAGACCAGCTTGGACAATGTGACGAAACCGTATCTCTACCAAAAATACAAAAAATTAGCCCAGTGTGGTGGTGTGCACTTGTGGTCCCAGCTACTTGGGAGGCTGAGGTGTAAGGATGGGTTGAGCCTGGGAGGCAGAGGTTGCAGTGAACCAAAGTTGTGCTACTGCACTCCAGGCTGCTTGACAGAGTGAGACCCCATCTCAAAAAAAAAAAAAATGGAAAAGTGCAGGGATGTACACCCATCAGAAGTGTATTGCTCCATGAATTTTCACAAGCTGAAGGTACCTGTGTAACGATCACCCAGCATCCTAGAAGCTGCCCCTGGCTTTTGTCTATGTCACTCCCTCCCCATCACAAGGAGTAAGTAGTCACACTTTCCCATATATATATATATATATATATTTGTCATTTTAAAAAATATATAGTCATGTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACTCCGTCTCTACTAAAAGTACAAAAAATTAGCCGGGCATGGTGGCGGGCACCTGTAGTCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATAGTCATATATCAATTAACAATGGGGATATATTCTGAGAAACATGTTGTTAGGCACTTTCATCATTGTGCAAACATCATGGAGTGTACTTACACAAACCGAGATTGGTAAAGCCTGCTACACACCTGGGCTGTATGGTATAGCCTATTGCTCCTAGGCTACAGACCTCTACAGCATGATGCCGTACAGAATACTGTAGGCAACTAACACAATGGTAAGTATTTGCATATTGAAACATAGTAAATATAGAAAAGGTACGGTAAAAATACGGTGTTTTGGGACCACTGTCATATATGCAGTCCATTGCTGACTGAAATGTTACGTGGCACATGACTGTTTATACATTTTCCTATTTTTGTCATTTTAAGTATTAAAAGTAACTTCTTTTCTTCTAAAAGTAATATACATACCTGGATGTGGTGGCTCATACCTGAAATCCCAGCACTTTGGGAGGCCAAGACGGGCTTATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCACCTCTACTAAAAATACAAAAATCAGCTGGGCATGGTGGTAGGTGCCTGTTATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATGGCACTACTGCACTCCAGCCTAGGCGATGGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAGCAAAGTGTTTACAGCTTTGCATAAAGTTTCCTGAAGCATATATGCATTTTAAAATATTTAAAAAAATATTTAAAAAGCTGAGACTACAGGCACCTGCTACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGACACGGGGTTTCAGTGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCTGGCCCTAAAATATTTTTTATACTGACGTATTTAAAAAGTATTGTATTTTTTTAATACAATACTTTCCAGGTATTGTACCATGTGCATTTATAATATTTTTCTACATCATCAAAATAACTGATTACTCCTAAGAGCATTTCTTAATATCATACAATATCTGGTCCTTTTTCCAATTTACCCACTTGTTTCTACAATACCTTTTCAGCAGATTCATCTACCTTTGTAACTAATCCACTATCAGCTATTCATATTCATTTAAAAGACTTTTGACATATTTCATTTCTACCCTAGGTATAAAAAAATGTACTGCCCTAAACTTTTGCCAACTTTGGGTATTATTAATGTTTTTGCTGATTTGTTATATTATTTCTTTATGAGTATTGTTATTTTTAGAGACAGGGTTTCGCTCTGTCACCCAGGCTGGCATGCAGTGGTGCTATCATAGCTCACTGCAGCCTTGAACTCCTGGACTCAAGGAATCCCCTGCCTCAGCCTCCTGATTAGTTGAGATCACAGGCATGTGCCACTACACCCACCTGATTTTTTTTTTTAGAAGGAGTTTCGTTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTTGGCTCACTGCAACCTCTACCTCCCGGGTTCAAGCGATCCTCCAGCCTTAGCCTCCTGAATAGCTGAGATTACAGGCATGCACCACCATGTCCAGCTAAGTTTGTGTTTTTAGTAGAGACGGGGTTTCACCGTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCTGGTCATCCACCCGCCTCAGCCTCCCAAAGCGCTGGGATTGCAGATGTGAGCCACCATGCCCAGCGCTAGCTAATTCTTTTACTTTTATAGAGACAAGGTCTCGCTATGTTGCTGAGGCTGGTTTTGGCTTCCCGCCTCGGCCTCCCAATATACTGGTTTTACAGGGTATCCAGCCTATGTTCTTTATTTTAAACTTAACATTGTAGCCCAAGCTTTTAATTTTGATGTTGGGAATTCTCCAAAACCATCATTTAAACATGGATAGGTAATGTTCCATCACAAGGGTTCAGAGTATGTTCTTCCTGGGGTCCCCGAGTTAGCTGTTACAGCTTTTCCCGTCTAATCAGTAAATAAGCCTCCAGTGGTGGAACTCGTGGTCAAGGTTCTGCCTTCTGAGTTCATGTGTTTCTCCCTCCTCTACATCAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAGGTGAGGGAGGTAGGGGGCTGGGATAGCTACTACCCTGAGGATGTGCAGGAGCACCCAGGTGGATTTCCTGCCTGGTCCCTCAGCCTGCGTCTGCAGGCCTTCAGGCCTCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811:ENST00000469582:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(27.5=43.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains