RnoINT0105052 @ rn6
Intron Retention
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8454002-8464442:+
Coord C1 exon
chr3:8454002-8454070
Coord A exon
chr3:8454071-8464271
Coord C2 exon
chr3:8464272-8464442
Length
10201 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTCTCCCTCCTTTGCCTCAGAAT
3' ss Score
9.25
Exon sequences
Seq C1 exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
Seq A exon
GTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAGGTAGGCTCAGTCTTGTTCAGGCTTCTTCTCTTCTTGGACTGGTCAGTCAGATTCTAGCAGGCCTCAGACTTGGTATGATTGCAGAATTCCCGTGAGCCTCATTTACTGGGTGTCTTTGTAAACCCTGAAAGCTTAGGCACCACTTAGACCCTTGCAGCTTTGCTGTGTGGTAGGTCTTGCTGTTCTGCTGTAGAGATGAAACAGGTGGGAGCTAACCTGCCCAGAGTCCTACAGAGAGAGCAGCAGAACTGGAGTTAGGACTCTGTCTCATTCTGGAGACTGAACTCGGTCTCTGCTTTGCCACATGGATTTACGTGTCTGTCTTAGTGTCTGAAGTATAATTAACACTGAGGTTGGGGATGTGTGCATACACCAGCCTATAAAGTAGCAAAAAAAGTGGCCATACGGATGATACAAGGGTCTCATCCAGACAGCTTTGGAACAAATGAATTTTCTTCAGTGTTTGTAGCCAAGAGAATATGTCTTATGCTATACCTTAGCAGTGCATATCCATGTACCCGCTCAATCACCCACCCACTCATCTGTCCATCTGTCCATCTGTCTATCCATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCGTCTGTCCATCCACCAACCCACTCATCCGTCCATCCACCCATCCATCCATCTATCCACCAACTCACTGATCCATCCATCCACCCATCTGTCCACTCATCCACCCACCCACCCACTCATCCATCTGTCCATTCGTCCATCCATCCATCCACCAACCCACTGATCTGTCCATCCATCCGTCCATCCGTCCGTCTGTCCATCCATCCACCAACCCACTGATCTGTCCATCCACCCATCCATCCATCTGTCCATCCACCCACCCATCTGTCCATCCATCCGTCCATCCGTCAGTCCATCAATTCATCGACCCACTTGTCCATCCCTCCAACCATCCACTCATCCATCCACCTACCCATCCATCCACTCATCCACCCGTCTGTCTATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCACCAACCCACTGATCTGTCCATCCACTCATCCATCCATCCACCCACCCACCCACCCATCCATCTACCACCAGCTCTAATCAGCCGTCCATTCAATGGCTCACATGTGGTGCACTTACTGAGACTTGCACTATGAGTTGTCCGCATGGATCTAGGTATGAGCCTGGCAAGATGCGCTTTATTATTCCTTTTAAGCGCATTGCAGTGAAGAACTTAGTGATAAGAAAAGGCTAAGATAGTTTCATTTATGTTCTGAACAAATTCCTCATTACCAGTAGAAGTAAAGATTTCAAAATAATGCTTAGGTGAGCTACCACCTTTTTTTTTTTTTTAATTTATTTTATTCTATGTATGAATACACTGTAGCTGTCTTCAGACACCAGAAGAGGGCATCGGATTCCATTACAGATGGTCATGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAGGACCTATGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCGTCTCTCCAGCCCGAGCTGCCACCTTTAATTCCAGCACACAGCACTTGGGGAAGCAGAAGCAAGCAGGTGGCTTTCTGAGTTTGAAGCCAGCCTAGTCTACTTAGTAAATTCCAGACCAGCCAGGGTTACATGGTGATAACCTTGACTCACACAAAACAAAACTTGCTCTGCCTGATCTTTCAGAGTTAGTCTTTTTCTTACACTTTGTTACTCTGAAAATGAGAAACCCCCAAAGTGGATGTAATTGTGACATTCATAATCATACCACATGGGTTTGACTCTTTGCCAGTTTACTCACAGGGAATCTGGGTATCCTCTGGAATGCACGGAAAGTGTTATGAACAGTTTAAAAACACAAGGAAGATGGGCATTTCTGGCTGGGGGGGTAGCTCGCTTGAGTGCATGCTTAGTATGTCTGAGGCCCTGGGTTCCGTGCCCTGGTACTGCCTTCCTAAAAGGTCCTGCTCCCTCAGAAGGAGACTGAAATAAAAATGGTCCCTTACCATGTTTTACTGCCTTAGTAGTAACCATTGAAAAGTAAACTCTTGCTGAGTGTGGCTGTATACTTCTTGAATTCCCACACTCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTGTGAGGCCAGCCTAGTCTACAAAGCAAGTCCAGGGGAGCCAGAACTAGTTACACAGAAAAACCCTTTTCAAAAAAACCAACCTACCAACCAACCAAAAGAAAAAAAAAAATTGAAACATTAATTTACAGGGTATACCAGATGTCATGGTGAGTGCCTATAATCCCAGTTTTTGGGAGGCTGAAGCAGGAGGATTGCTAACAGAGGCCAGCTGGGACTTAGTGAGGCTTTGTCTTAAAATTAAAAATAAATTGGAATAGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAATGAAGTGGAATAAAAAAGGGAAGGTATCATTTTTATTGGCTAGAAAGGAGTTTAAAGCTAGAGAGATGCTGCGGTTAAGGTCACCAACTGCTCTTGCAGAAGGCCAGGACTCAGTCCTTGCACCCACATGGAACCTCACGTCCCTCACTCAAGCTACTCTGCTCTCCTTCACACTCCCTCCTCCCGGCCTCTGCATGTACGACGCACACACGCTGAGCAGACAGAAACAGGCAAAACATGCATGCACATAAGTAAAAGAGTAAAACAGCCAGGCAGTGGTGTCCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATCTGCGTTTGAGGCCAGCCTGGTCTACAGAGCCAGTTCCAGGACAGCCAGGGCTACACAGAGGACCCTGCTTCTAAATAAGTAGTAAGTGAACAAACAAACATCTTTAAAAAATGAAAACCGTAAAAATAAAAATTTCAGAAGAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAATTCAGAAGAGAAAGGATGAGCTCTTGCTCTCCTGCCCTTGTTCCTTTCCCCTCTTTCCCCTCTCCATTCCCTTCCCCATCCTACATGCTCATAGTCAGCCTCTACTCTATGGTCTTTCTCTGCCTCTCTCTCAAGGCCTTTCCCCATACCCTGAATAAACTCATTTTGATACTAAAAAAAGAAGAGAAAGATGTACAAGAGTACAGTGGTCCCATGTGGTCAGGCACACTAAGTCAAGAAGTTCATAAGACATTGTTGCCGTTGAAACAGGATCTCAGGTATCTTAGGCTGGCTTCAAACTTTATACTTAGCTGAGGATGTACCACTGTGGGCCTCATGCCCCTGGAGGCCTGCGAAGGCATCAGATTTCTTGGAACTGGGGTTACAGATGATAACTAACTTGGTAGATGGTAACATGCCAGCTTGTGAGCTGGCTTGTGGGTGCTGGAATCAAAAGGTCCCTGGGGAAGATGAGCCAGTGCTCTTCACTAGGGGACTATTGCGCCAGCCCCAGTATTTATGTACGTATGAAGCAGGCAGTGCTCTGAGGCAGAGGATCCTCGCTCCGGCCTCAGCATCTGTGTTTATCTAGGTGTTTGTGGGAGCCGACGTCAGTGCAGTGCCTCAGGTTCTCGAGGCTTTGCATTGCCCTGGAGTCGGTTGTAAATGGCAGTTGCTCTGAATCACTGGACATGGGTACCAACAACTGAACCCCCGTCCTCTTAGTGCTGAGCTGTTTCTTACTCCATCAGATCTTTCCTGTTTTTACTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTCCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTGTTTTTACTTTTTGAGACAGGGTCTTATTGTTTATTCCTAGCTGGTCTGAAACTCACCGTGTACCTTCCACTGGCCTCACACTCAGAGCTCTGCCTGCCTCTGCTGAGATCTGTACCATCATGTCCAGCCTTCCAGCCCCTGTACCCCTTTTTTGAGACAGTGTCTCTATTATGTAGCTCTCTGGCTGTCCTGAAATGCACAATGCAGACCATGCTGGCCTTGAACTCCCAGAAGTCCACCTGCCCTTTGCCTCTAGAGTGCTGAGATTAAATGCCTGTGCTGCCACACCCAGCTGCTGCCCTTTTTACAAATTAAAAAGGTGTGTGTGGATACATGTGCAGATGCATGTACTCAAGGTGGCGAAAGGACAGCCTTGGGCTGGAGAGATGGCTCAGAGGTTGAGAGCACTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCACAACCATCTAGAATGGGATCTGGTGCCCTTTCCTGACATGCAGACATACATGAAAAAACACTGTGTATATAGTGAATACATAGATCTTTAAAAAAAAAAAAAAGGGAAGGACAGCCTTTAGTGTTGTTACTCGGGAGATTTCAACTTGTTTTTTGGGGACAGGGTCTCACAGAACCTGAAACTTGCCAAGTAGGTGAGGCTGGCTGGCCATTAAGCCCCATGGATCCTGCTGCCTTGCTCCCCAGAGCTGGAGTCGTAGGCATTGCCACCAAGCCTAGGAGTTCTGTGTAGGAACTCAGGTCTTCATGCTTGTGTGGCAAACACTTTCCTGATTGAGCTGTTTCCAGCCCTAACTTTAACTTGTGATCCTCCTGTCTCTACTCCTCAAGTGCTGGACCTAGATGCACACACCACTGCCCCTGGTTTTCTGTGGTCCTGGGGATTGAGCCCAGGGCTTCACACACTCAGCAAACCCTCTTATCAACTGAGCTACATCTCTAGCCTATTAATAGATGGTTTAAAAATCGCATTCATTTGTGTGTGCATGCAGGTCAGAGGGTAACCTGGAGAGTTGGTTCTGGCCTTCGACCATACGGATAGAGTTGGCCTCTCTTTGCACAGAAGTGATGTGTCTGTAACTTCTGTGCAGGCAAGCTGATTGACTGGTGCTCAGAAGATCTGTAGGCTGTGGAGAGCAGCACTGCTTGCCTCCCAGCATGGCGTGTGTTACTGCTGTTTCCTTTTGTTTTATGAGACAGCCTCATGTTGTCCCAGCTGACCTGGAAGCCTCTGTATAGCTGAGACTGGCCTAGAACTGATCTTTTTGCCCTCACATCCAGGTTGCTAGGATGCCAGGTACCTGCCAGAACACCCGGCTTCCAGCTCCCACCTCCGCGGTGCTTCATTATACTGTATATTCTTACTGCTATTGTTGTTGTTTCAAATTCTGTTTTAGTTATTTTGAGCCAGTCTCACTATACTACTCTAGTTAACTTGAACTTGGTGATGCACCCGCTATGTATGGCAGAGTTTCTGTTAGTAAGCTTCATATTATACCACTTTTCCTCTGTTGGTTTGGCTCTTTGAGACAGGGTCTCTCTGTAGTCGTGGCTCTCCCGGAACTGTGTCGATCACCTGCCTCTGTCTGCTGAGTGCTGGGATTGAAGGTGTTTGCCACTATGCCTACCAACATCTTTCTAGCTGGGCAGTGGGGACTCACACCTTTAATCCCAGCACTTGAGAGGCAGAGACAGGCAGATCGAGTGAGGTCGAGGACAGCCAGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAGAAAGCGAGTTTTGAAAAACAAAAAACAAAAGAAAAACCAAAAAACCCTTCCAGAAAGTGAAGAGGCCTACTGTGATGGTAAAGATCTGTAATCGAAGCACTGAGAAGGCCGAGGAGGCAAGAAGGTTGCTGTGCGTGAGGCCAACCCAGGCTACAGGACCCTGTGTCAGTCAGAAAAAAGTCAAAGCATGTGAGACATTGTCACTCACAGCTGTGCTGTCAGCATGCAGAAGTATGAGATAGGAGAATTGTCAAAAGCTTGAGGCCATTCTAGTCTACACAGTCAAGTCAGGCCAGCCTGGATCCACCCACCCACCTCCTCTGCTAAATGGTGGGTTATGCTTGTAATCTTAGCACTGGATAGCACTGGATAGCCTAGGCTACTATGTGAGACTATTAAACACATAACAAGAGCCTTTAGTCTCGGGGTTGGGGATTTAGCTCAGTGGTAGAACACTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAGAAAAGAAAACAAAAAACAAAGAGCCTTTAGTCTCAGCACTCGGGATGCAGAGGGAGGTAGATCTGAGTTTGAGGCCATCCTGGTCCACAGAGCCAGGAATTCCAGGAACCAGGGCTTCACAGAGAAACCATGTCTCTCGAAAAACCAAAACACAAAACACAAGAAGGTGGGGGTGGGGCTGGCAACAAGATGCTCTGTGTGTAAAAGAACTTGCAGCAGCCAAGTCTGATGATCCAGAGTTTAGTCCCTGGGATCCACATGGTTAAAGGAAAGAAATGTTGCTGAGAGTGGCTGGTCAAGGTATAGTCTTATTCAAGTCTGGTGATCTGATCTAAATTTCTATAAATCACGGAGGGGTAGATGTCAAGCACCAGCCTCAAAAAGTTTTCCTCTGACCTGCACATGTATACCATGGCATGCACAAGTACGTACACACACACACACACACACACACACACACACACACACACACACGCACATTAATTTTAGTTAAAAAAAGAGAGATGCTGCGGAAAGTACCCTTCCTGTTGCTGTAGGTTGCTGGGAGAAATAGTCCTGTCCCTTGCCTGGAAGCTTAATTGTAACGAGTTCATCCCCTTCCTGGTGCTGCCTGGAAAGCCCTGACGCATGCTTTACATTTTGAGCAGAAGGGAAAGGTCCCGGGAAGTTCACATTTGGGATAGAGCCACAATCAGAGCAGAGGCTGTCATAATTCCTGAGGGCACATTATTTACATGTGTGAGTGCTTTGTTTGCATTGCATGCATGTGCATCATGTGTGTGCTTGGTGTCACACAGGTCAGAAGAGGGCGTTAGATCCCCGGGTCGATGGCTGTGAGCCACCATATTGATGTTAGGAATTGTGCATCATCTGTGCTCGGCAGAGGCTCCAGGCTCAGTTCCCAGAATTGACCAGCATTCCAGTTCCAGGGACATGCAGTGTCCATGGAGCTCAGGAAAGAAATGAGATTGACAGGCAGTTATGAACCATCCTGTGAATGCTGGGAGTCAAACCTGGGTCCTCTGCAAGAGCAACAAATGCTCTTAACCACTGAACCGCTGCTCCAGCCCTACCTGAGGTGGTATTGTTGATCTGTTGTTTTTGTTGGTACTGGGGAATGACTCAGTCTCAGTGAGGCATGCACCCTACCACCGAGCTACATCCCTCGCCATTGTTGGACCCCTTCCCCATTATTTGTCTGTAGAAGAAAGAAGATCTAAGTTTTCTCAGTCTTTTAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTAACATTTTTTTTAATATTTATTTTTATATATATATGACTAGTCAGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCGTTACAGATGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGCTCTAAACCAGCCCTTTTTAAATTTTTTTTTTCTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTAACATTTTTTTTAATATTTATTTTTATATATATATGACTAGTCAGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCGTTACAGATGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGCTCTAAACCAGCCCTTTTTAAATTTTTTTTTTCTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCTTTTTAAATTTTTTAAAAGATAGGTTGTCATTGCATAGCTGATGTGAAACTCCCTGTGTAGATCAGGCTGACCTCTAGTTCATGGGGAACTCCTCAGTGCTGGGAGTACAGATGCAGGCCACCGGCCCAGCTTCCAGTTTGTCTCTGGCCTATTCTCATCATCACCTCTTTTCCAGAGTAACCTTTGCCCTGGCCTTTCCCATCACAGTTTCACTTTTGCATGAATTTTTTATTATTTATTTCATGTGCATGAGTGCCTGTTTGTGTGTCCTTGTACCCATGTGCATGCAGTGCCAGCAGAGGCCAGAGAGGGTGTCAGGTCCCCTGGGACTGGAGGTACAGAGAGGTGTGAGCAGCCCATGTCATCAAATACTCTAAACCCCTAAGCCAGTCTCTGGCCCTGCTTTGTTTTTTTTTTTAAGATTTATTTTATTTATATGAGTACACTGTAGCTGTCTTCAGACGCACCGGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCGTGTGGTTACTGGGAATTGAACTCAGGACCTCAGGAAGAGGTCTTTACCGCTGAGCCATCTCTCCAGCCCCCCTGCTTTGCTCAGGATTAAATAAAAGGCCTGTGTGAACTAGCTACCCACTGAGCTACCCTTCCAGGCTCTCGCTCCTTTAAAAACAGAGTTGTATTCATACTCTGAATTCTTATCTTCTCAGAAGTGGACTCGTTCCTTTGCTGTCATTAAGAATTAAGGCACATTTTTCTTAGGACCACAGAAGCTGTTTCTGTAACTTTTTTGTTTTTGTATTACTAGGGGTTAAAACACTTCCTTTGATGAGCTCTTGCTATGTTGCCCAGGCTGGCCTAAATCTATAGGCTCAAGTGATTCTCCTGCCTCAAATTTTGCAGTAACTGGGACTAAAGATGTAGTGTTAATTTTTATTTTATTTTGTTTCTGAGACAGGGCTGGCCTTGAACTTGCTGTGTAGTGGAATTTATATGATCCTCCTGTCTCACCTCTCGAGTGAGAATACAGATGTGAGCCACCCCTCCCAGCTGCTTGCTTTGTGCTAGGGATGGAGCCTAGGGCCGTTGAGCTAGCTTGTTTTGTCTTTAAGTTACATTTATCTAATTCGGCTTCTATGTCTACTTATGGCTGGCCTGGAACTCACTCCGTAGACCAGGCTGGCCTTGAATTCATGGAGATGCACCTGCCTCTACCTCCTCAGTGGTCAGATGGCAGAGTATGTACTTGTGAGTGTCTGCAGATATTTCAGGGACACCAGAAGAGGGCTTCAGGCTCCCTGGAAGGGACTAACAAGGTAGTTGGGAGCAACCTGATGTCCTGCGAGCAGACTTTGTCCTCTGCACGATCAGTGCACACCCTTAACTGCTGAGCCGCCTCTCTAGCTCTTGTTAGCCCTCTGTTTTATTGTGTAGGTGTTTTGCCTGAGTGTCCATAAAGCACTGCATGTATGTCTTGGACGCCAGAGGAGATGTGTCACATCTCTTCAACTTTTGGAGGCAGGGCTTCTCTGTGTAGTCCTGACTGTCCTGGAACTCTGTAGACCAGGCTGGCCTCAAACTTAGAAATCCATCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACAACCAGCATGTGTCTGTTTCTCTCATTTTCTCTTTTTTAAAAGGTAGAGTGTTTCTTTATGTTGCCTGATCTGGTCTTGAACTCCTCTTGCAGAAGTCTTAGCCTCCCAAGTAGCTGGGACTATTCAGGCACACAGCCCGCAGACCTGGCCTTCTTATCTCAGCATTCTAACCCATGCCTTTTTTTTCAATGTTAGAAATTCTTCAAAACCATCCTTTAGATTTGGGTAGGTAATGTTTACTTCGGGAGGGTCTGGAGTGGTTGGTTCCTGGGCAGGACCTCTGGGTTGCCACTGGCTTGTGTTGGCTCTGCCCACCACTTTAGCAGTCAGCAAGCCTCCAGTGAGCAAATAACTACAATGGAATTCTGTCAGAGGCTTGGCCTTAGCGGCTTATGTGTCTCTCCCTCCTTTGCCTCAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584:ENSRNOT00000020073:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(26.7=42.1)
Main Inclusion Isoform:
ENSRNOT00000041921fB10047
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]