HsaINT0118719 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45894146-45894725:-
Coord C1 exon
chr17:45894622-45894725
Coord A exon
chr17:45894239-45894621
Coord C2 exon
chr17:45894146-45894238
Length
383 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCCCCACCTTGACTTGCCAGGCC
3' ss Score
6.97
Exon sequences
Seq C1 exon
AGCTCTCTGAGTGTCAGGGGAAGCTCCAGGAACTACACAGGCTCCTCCAGAGCCTGGAGTCCCTGCACCGAATCCCCTCAGCCCCTGTTATCCCCACACACCAG
Seq A exon
GTAAGATCCAGGGGTACACACAGGGTCCTGCTCAGGCCCCCGATCCCATCACTTCCCCAGGATGGGTCCTATTCCTCCTACATCGCTGCAGTTTCCTGGAGAGCCATGCATCGCCTGGTTTCCTCCCCACCCCTTACCCATGTCCAAACTGTATCAAGATTGTCTCTGTTCCTCCATGCCCATGCCTCTGCCAGGGTGGCTGTCATCTTCCACTGGGATGTCAGTTGTCTCTGTCGCCCTGCCTGAGCGGCCGCATCCTCTGTGCTGGGTAATCTGCGCCCTCCTCCATGGCGCAGGAGGCCGTCTACCTCTCCCAGGCTGTGATGGTTTCTGCCCCTTTTCCCCACCCTGTGAGTAAAATTGCCCCCACCTTGACTTGCCAG
Seq C2 exon
GCCTCAGTGACAACCGAAAGACCCAAGAAGGGGAAACGGACAAGCCGCATGTGGTGCACCCAGAGCTTTGCCAAGGATGACACCATTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGAGTGTCAGGGGAAGC
R:
CCAATGGTGTCATCCTTGGCA
Band lengths:
190-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)