MmuINT0113751 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96916841-96917261:+
Coord C1 exon
chr11:96916841-96916944
Coord A exon
chr11:96916945-96917168
Coord C2 exon
chr11:96917169-96917261
Length
224 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATTACTCTTCAACTTGGCAGACC
3' ss Score
4.7
Exon sequences
Seq C1 exon
CACTCTCAGAATGCCAGGGTAAGCTGCAGGAACTACACAGACTCCTTCAGAGCCTGGAGTCCCTACACCGCATCCCCTCTGCCCCCGTGATCCCTACACACCAG
Seq A exon
GTAAGGGTCAAGGGGAGGAGGCAGGGACTGCTCAGGGCCCCTCATTCCCATCACTTCGTGGGACAGGACTGCCCACCTCATACCTGCCCAGGAGTCTCCAGGCTGTTTTCTCTGCTCCATTTTCCCGGGTTTCACGCTACACCCTATGCCTGAGCAATCTGTGCTCTCCTCCATGGCCTCTCCCAACTCTGTTGGAAGATTAAAATTACTCTTCAACTTGGCAG
Seq C2 exon
ACCTCAGTGACGACCGAGAGACCCAAGAAAGGAAAACGAACCAGTCGCATGTGGTGCACACAGGGCTTCGCCAAGGATGACACCATCGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTCAGAATGCCAGGGTA
R:
CGTCCGATGGTGTCATCCTTG
Band lengths:
196-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: