RnoINT0105846 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84990681-84991107:+
Coord C1 exon
chr10:84990681-84990784
Coord A exon
chr10:84990785-84991014
Coord C2 exon
chr10:84991015-84991107
Length
230 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATTACTCTTCAACGTGCCAGGCC
3' ss Score
3.47
Exon sequences
Seq C1 exon
CGCTGTCAGAATGCCAGGGTAAGCTGCAGGAACTACACAGACTCCTTCAGAGCCTGGAGTCCCTACACAGAATCCCCTCCGCCCCTGTGATCCCCACACACCAG
Seq A exon
GTAAGGGCCAGAGGAATGGGCAGGGAATGCTCAGGGCCCCTTATCCCCATCACTTCATGGGGTCAGGCCTGCCTACTTCATACCTGCCCAGCAGTCTCCGGACGGTTTCTCTGCTCCATTTGCCTGGATTACTGCCAGCATGCTGCACCCTTATGCCCGCCCGGGCAATCTGTGCGCTCCTCCATGGTCTCTCCCAACTCTGTGACTGAAATTACTCTTCAACGTGCCAG
Seq C2 exon
GCCTCAGTGACGACCGAGAGACCCAAGAAGGGGAAACGGACCAGCCGCATGTGGTGCACACAGGGCTTTGCCAAGGATGACACCATTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAGAATGCCAGGGTAA
R:
CCGTCCAATGGTGTCATCCTT
Band lengths:
196-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]