HsaINT0120760 @ hg19
Intron Retention
Gene
ENSG00000007372 | PAX6
Description
paired box 6 [Source:HGNC Symbol;Acc:8620]
Coordinates
chr11:31832376-31839509:-
Coord C1 exon
chr11:31839357-31839509
Coord A exon
chr11:31832564-31839356
Coord C2 exon
chr11:31832376-31832563
Length
6793 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AATCTCTGTCTCCTTCCCAGGAA
3' ss Score
9.4
Exon sequences
Seq C1 exon
ACCCTCTTTTCTTATCATTGACATTTAAACTCTGGGGCAGGTCCTCGCGTAGAACGCGGCTGTCAGATCTGCCACTTCCCCTGCCGAGCGGCGGTGAGAAGTGTGGGAACCGGCGCTGCCAGGCTCACCTGCCTCCCCGCCCTCCGCTCCCAG
Seq A exon
GTAACCGCCCGGGCTCCGGCCCCGGCCCGGCTCGGGGCCCGCGGGGCCTCTCCGCTGCCAGCGACTGCTGTCCCCAAATCAAAGCCCGCCCCAAGTGGCCCCGGGGCTTGATTTTTGCTTTTAAAAGGAGGCATACAAAGATGGAAGCGAGTTACTGAGGGAGGGATAGGAAGGGGGGTGGAGGAGGGACTTGTCTTTGCCGAGTGTGCTCTTCTGCAAAAGTAGCAAAATGTTCCACTCCTAAGAGTGGACTTCCAGTCCGGCCCTGAGCTGGGAGTAGGGGGCGGGAGTCTGCTGCTGCTGTCTGCTAAAGCCACTCGCGACCGCGAAAAATGCAGGAGGTGGGGACGCACTTTGCATCCAGACCTCCTCTGCATCGCAGTTCACGACATCCACGCTTGGGAAAGTCCGTACCCGCGCCTGGAGCGCTTAAAGACACCCTGCCGCGGGTCGGGCGAGGTGCAGCAGAAGTTTCCCGCGGTTGCAAAGTGCAGATGGCTGGACCGCAACAAAGTCTAGAGATGGGGTTCGTTTCTCAGAAAGACGCGGAGTACGAAAGAATGCGGCCGACAGAGCTGGGCAGCGCGTAAAGCTCCCAGCGTGTGATTTGAGCTTCACTTCGGAAGACCTAATAATTAGCGATTCTCACTGAGCTAGAACGCGGGCTCCGGTTACTGCGGGCGCTGCGCTGGCTGCCTCGGCGGGAAGCGCGCGGGCGCCATGGGAGCCGGGCCGCCAAGCCCGGGAAAGAGAAGCGCCCACCACCCTGCGGCCCTTGGAGGGCCAGAGCCGGGGCCCGGAAGTGTCCCCTTAGTGAGTCAGGGAAGGGACGACCCAAACTTAGACTAACTTGTGGTTCAGCCGGGCGAAAGTCCTGGGAGCCCGGCCCTAAAAGCAGCTGGAGACGCCCAGGCCGGCTTAGGCGGGGCACCCAAGAACCCCGCCCGGGAGTTTGGGGCGGCCTCTGGGCCAGGCCCCGGCTAGCCCCCAACCCCCACTCCCACTCGCGCTCCTGCGCCCCCTTTCTAGGTCTTCTGGGAGCACCTTCGGAGCTCAGTCACCTGTGACAGGTGTTGGGACCTCCGCCCGACTCCGAGCGGTGGCGCCCCCTGCTCACCTCACCTGGAAACGGGGGACGAGCGCAGTGGCAGTCCGGCCGCACGCCTTACCTGGGCCGGGATCCTCTCCTCCGCGGGTTCCTCTCCCTGGAGCTGGGCGGCGAGCAGGTCGCCTGCTTCGCAGTGGGAAGTGGACCTTCTCCTCCAGTCATAAATCAAACCCAGCCATCCTCGGGCCTCCTCCCTCATTAGAGATGTTTATTGGAGATCGTGTTTATTCGGCTGTCACGGCGAGAAAACGCGGTGACATAATTACCTCTGACCAGAGTCCTCGCTCCGCGCCCAGGGCGAGCCGAGGACCTCCTCTGTCGCCTTCTCATGCCCGTGCCCTTCGTGATCGGAGGGCGCCCGTGATAGGCTTGTCTTTTTTTCCTCAGACCCTCTCATAGAATTTGGATGACTGGAATTACTATTCAGATTTCCCCAGGGCCCGGAGTTTATTTATTTATTTTAGAATTGGAAAGGAAAACCGAAGGGAACCCAACGCCCCTCCGGGGCAGAAGGGGGCAGCGCGCGCGAGGCGGAAGGACAGTCACTCTCGCTGCACAAACTTTCCCGCGGGCCGCGCCGCGCGTGCAGGGGCTGGACGCCACCCGGCGCCAGAGCCGGGCCTGAGGAGCGGGGTCTGGCCGGGAACGAGGGCTGCCAGCCTGGGTGGTGTCATTTGTTGCTTCATTTTTCATTCCCTTTCCTCTCGTGAGGAATCAGAGGCATCGGGCCGCGCGGGCTGAGAATTCTTAAATTCTCCCCGGCCGCATTCGGCTGAGCCAACCCGCAGTTCCTGTCAGCCCCTCTGTCCCCCGGGCAGCGGTTTTCCCCGCTAGCCAGGTTTGGAAGTCACCCTCTGTGAGACTGGGTTAGGAAGTGACGAAAAGCGCCGAATTGTTTTCAAATTGAAAATACTTTTTTTTTTTTTTTTGGAGATAGCGCTGACAAATATATGGGATCCCGGCTTTTGATCCCTGGCTGCCGCCTCTGTTCTCCTGTCGCTAATAAAACTCGCATTGAGCCCCTTAGTGCCTTGATTAACAGGCAGATTAACTCTTACTGGGGTTGGGAACAGCTTGTCCTAATCAATGTCATTTTAAAAGCCCGTCAGGATGCGCTTAGCTTCGGTTCCCTGGATGCTTGAGCGAGCCAGCCATGACATTTGCTCCCTCCCCCTCCCCAGCCTCAAATCCCCCAGTAAAGCCCCCAGTTCCCGCCTGCCTGTTCCCAGGTCTACAACGGGACAAATCGCAGGACCGGGTCGTTGGCCTTTAGAATAGGCAGCGGTTTAGAGAGGGGATATCCAGGGAGAAGGGACTGAGGTGGCCTTGACTTGCTTGCTTTTCCTTTGAAGCTGAACTCTTGCCTCTTGGGGGCAGAGGTTACAGGGAAAAGAGAGATGGGGGGATCGTCACAGGGTGATGAAATGGAAAGCAAACTTTTCTAGGAACCCTATTTGCAAAAATCGGAGAGTGCCGCTGATTTCAGTTGTCCTACATGTCAGGAGTTTTAAACCTAACTCCTATCTGGACAACAGCATGGAGGGACTGGGAGGCAAAGCCTTGGGAGTCTGACCCGCTGGGCTGCTAGGAATCCCTTTGCTGGGAGACTCCACTGGACAATGTTATTTTAAAGGTATTTTGGGGGTGGGCAGGGAGAAGACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGCTGGCCTCCCAGAGCGAACGGAAGAGGACTGAGGACTGAACCCAGGGAGCCCCTAGCACTGGCCATTTGGCAGGAGGCGAGGAAGGGCGAGGGCACCGCGGCTTCCCCCCAAGCCGAGCAGTGGCCACAGCCTGAAGGTGCCACGGGGCGGCTCTGGGATCTTCTTGGCTTTTCTAGGCTCTGGGCTCGGCGAGGCTGCCGGGTTAGCGGGAACCGGCAGGTTGCTGGAGAAAGGAGAGGGACAAAGGCCTGGAAGTGGGGGAGGCACCAGGGACTGGGCGGCCGGGATGGGAGCCTTTGCCTTTAGGGCTCACTGGACCCGTTTGCCAGCTCCGCGGACAAGGGATCCCACCTTCCCAGGGTCTGCAAAAAGAGAGACGTTTGGGGCACTACAAAGTGACGCAGGTGTCTGCCAAGACTTTCCTTCTCCAAAAAATGCCAGTCTTCACCCTTTCCAGCGCGCCGGCGCTGCGCCTCTGCTTGACCGGGGAAAGAGAGAGTTTGGAGGTGTCAGAACTGTCAGAACTCCGGATGGGAGGCTCTTGGTTCTGAAGCTGGGAGCTGGAGGCACTTCCCCCCAGAAGTGGGCACTTCTTTGCCTCCCCGAAGGCCTGATGGGGTGGGCACAGGGGAATGCCAGGGATCGGTGCGGGTGAGATGCTTGCCTCACCTCATGTTGACGCATCAATACTGGCTAGAAGCTCTGGGCAGGCTCTGGCGAGCCACGGTCCCCCAGCGGGACTCCCTCCACGCAGACAGCCCCGCTACCGGGTGGGACGACCCCGGCGGCCCCCGCGGGAACGCACCCGCCGGCCTGAGAGGTCCTCCCTCTGGCCACAGGGGGCGGAGGGTAGGGGGGAACAGGGGCCTGTGGGGAGGCGGGGAAAGGAGACAGAACCTAAAGCGCAATCCCCGCCGCCCCCCCGCGTCTTGGAGGGCAGCAAGTGGGCCTCGGGCGTGTTGGTAGCCGCAATTAAAATGGCGACCTGCGAGTTGTCTCGGTTTTGTACACACCTCTGGCAACCGCGCCCGCACCTCAGTCTCGGCCCCCACACCCCTAGGCCGCTTCGCCCCCAGAGCCGGTACTTGGCAGAGGGAGTGAGGCTCCCCACGAGGTAGAACAGCACCCCCACCTTCCTTGAGACCAGTCCAGAGAGAACGAGGAAATCTCACTCTCACCCCTCTCTCCTTAAACTTTGAAAACTCGGCCTCATTCTGGGGTTGAACTCCCCTCCCCAAATATTGACACATGGGAAGCAGCCAAGTCCTTTTTGTTTTTTGTTTGTGCGGAGGAGTTTCCAGGAGTCTTTCCCGGAGCCCCCTTCCCCACCCAATGACGTCAGTGGCATTCACTCCTCGCTCCTTGCCTTTTCTGATTTTTTGTTAAAACTTTTCTCCGCAGCGAGATGGGGGTTGGAGGGGTGGGAGAAGGAGCTGATTCAAAGAGCCAGTGCCCTGGGGGGAAATAGCAACAAGATTACGGCTGCTTCTTTCCGAGGCAAAGCTTAAGAAGGTGCTAATCCACTCGGTCGCTAATTGAGAGGTTGTAAAAATGATACTCGCCTCCAGTTCGGACAGAATCACTTCCCCCCCCCCCGCCCCCCCGCAAGTCCCTCGCTCATGCACAGCGGACTTGAGTCTTGAGTCCAAGCTTCTTTAATGCTCGCTTGGAAAGTAAAAGGAGAGAGAAAGAGAAAGCCGACTTTCGCTGGTCTGGGACTCAGGGCCGCGGCCCCACTTGCCGGCATCCTCCGAAAGTCGCGCTCCTGCGAAATGAAACCTCGCCCAGGAGGCCGCGGACCTGGACACCCGGCGCCACCTCCTTCACCTCTGACCCAGGTTTCCTCCCGGCGCTGCGAGCTCCCGGGGAAGGGTTAGAGCCGGCAGCCCTCCCCAGCCCGGGGAGGGGAGAGGGTTATGCGACCCCACCTCTGGCTAGGGCCGGGGAGGCCTTTGCTTCCCGGGAGCCCTGCCCGGGCTCCTTGGTCGCAGGGCTGCTGGGTCCCAGGCAGGAACGAGAGGGTGAGGCCCACATGTGGCCCGGCGGCCCAGGGCGGCTTGCAGCGTCCTCACTGTCCCGGCTGCCAGGGGCTGCGGCGACGCGGCCAGTCAGCAGCGAGTTCAGGTCGCGCAGATTTTATTGATGAGCTCTGACTTTCAGCACTTTCCCTAAGTCAAGAAGAGTCTAGCGTACCCTTCGGCTGCTTCATTTCAGCCTCCCTGCCTCAGCTCTTCAGCCCTATTCCCCCTCGCCCTGTCCTGGGGTGTGTACAGCAGCCCAGGCCTTCCTTCTCCTTCCCGGCTCCGTGGCCCGAAGCCGCCGAGAGAGCTCGGGACAGCGCAGGACCAGGCAGCCGCTCGCTCTCCTGTCACCTTAACTGCAGGCTCCGAGGGGCGCCTTTGGAGTGTACTGAGGTGTGTCCTAATCGTGCGGCATTCAACAAATGGACTTCTGGTGTGTGGTCAGAAGAGAAAAGCCATTTACTTACTTTCCTCCCCGGTTTTCTGGCAACAGCTGAAGGGGAGCTGCCTCCGTGGACTGAGCAGACCCAGGAGAGGGAGTCGTGGTGCGGAGACACACGCACCACACACAGATGACCGGTGGCACACACGACACACGCTGACATACCGACATCGCCAGTGGGACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAATCCCTCCCAGCATTGGTCATCCGCCCCCCCACCCAGGCTTCCACTCCCCCTCCCCTCTTATCTCCCCTGGCTTCCCCTCCTCTCGGGCGCTGCGAAAAGCAGCCGCACTTAGTCAACAAATGGCACGTGGGAGAAGTTGGTGAGTGTTTGGTGAGGACTCTTCAGGGCTTTTCACAAGAACCCTCTGTACACAAAGTAAGTGGCGTGTTTACTCGGGCCTCTCCAGCCAGAGCTGTGCCTCTGCTCCGCTGCGCACCGCGGCTTCCGAAAGGAGAAAGGAGAGAAGAAAGGGCGGGGAGAGCGGGGTGGAGGATTTGGACAGGCCCTGGAGGCTTGGGCTGGGGAGGCCTCTGGCCTCGTTTAGTTCTCGGCCCGGCAACCTCCTCTCGGCCTAGGCTTCGCCGCGGCCTCCGCAGCTGGAATGGAGCTGCCAGGACCCAGTGACGCTCCCGCCCCTTTCCTCTTCTTCCAAGGGGCCAGGTGGGCTGGGGTGCGGCCGCCGCTGTGCTCTGTGTCTTGGGGCCCCGGCTGGGATGGGGTGGGGGCGGGCGGGGGCGGGGCGGCAGGCCACGCTGTCCTGGAGTTGGCAAGAAAGGACAGCACAGAAACTTGCACCCTCCGAGGACTGGGAGTCCCGAGTCCAGCTTAGGGGGAGTGGGGGCGCGACCCCCAACCCAGAAACCTTCACTTGACCGCTCAAGTTCGCGGCAGCAGGGCGGGCCGCGCCGAATCTCGGCGTGCGCGGAGCGGGGAGATGCAGGCGAGCGCCAGAGCCCGGGCTCGGGGGCCCTGCGCCGGGGAGAGGAGCCGGGACCCACCGGCGGAGCCGAAAACAAGTGTATTCATATTCAAACAAACGGACCAATTGCACCAGGCGGGGAGAGGGAGCATCCAATCGGCTGGCGCGAGGCCCCGGCGCTGCTTTGCATAAAGCAATATTTTGTGTGAGAGCGAGCGGTGCATTTGCATGTTGCGGAGTGATTAGTGGGTTTGAAAAGGGAACCGTGGCTCGGCCTCATTTCCCGCTCTGGTTCAGGCGCAGGAGGAAGTGTTTTGCTGGAGGATGATGACAGAGGTCAGGCTTCGCTAATGGGCCAGTGAGGAGCGGTGGAGGCGAGGCCGGGCGCCGGCACACACACATTAACACACTTGAGCCATCACCAATCAGCATAGGTGTGCTGGCTGCAGCCACTTCCCTCACCCACACTCTTTATCTCTCACTCTCCAGCCGCTGACAGCCCATTTTATTGTCAATCTCTGTCTCCTTCCCAG
Seq C2 exon
GAATCTGAGAATTGCTCTCACACACCAACCCAGCAACATCCGTGGAGAAAACTCTCACCAGCAACTCCTTTAAAACACCGTCATTTCAAACCATTGTGGTCTTCAAGCAACAACAGCAGCACAAAAAACCCCAACCAAACAAAACTCTTGACAGAAGCTGTGACAACCAGAAAGGATGCCTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007372-PAX6:NM_001127612:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)