HsaINT0121528 @ hg38
Intron Retention
Gene
ENSG00000174788 | PCP2
Description
Purkinje cell protein 2 [Source:HGNC Symbol;Acc:HGNC:30209]
Coordinates
chr19:7632393-7632830:-
Coord C1 exon
chr19:7632716-7632830
Coord A exon
chr19:7632518-7632715
Coord C2 exon
chr19:7632393-7632517
Length
198 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGC
5' ss Score
3.48
3' ss Seq
GTCTGTGAACGTCCACGCAGAGA
3' ss Score
6.2
Exon sequences
Seq C1 exon
GCGGGCTCCCCAGACCAGGAGGGCTTCTTCAATCTGCTGAGCCACGTGCAGGGCGACCGGATGGAGGGACAGCGCTGTTCACTGCAAGCCGGGCCGGGCCAGACCACCAAGAGCC
Seq A exon
GTGAGCATGGGCACGGGGGTGCTGTCCATGGGGCGTGAACGGGGTGGGAGTGCAGGGCAAGTGGTCATCTGGAGGGCCTGGGGGCACGGGATGTGGGAGGTGGTTGTGCACCCTGAAGCATCTGTGTGGGGGTGAAGGGGTAGGGTTGGGGGCCCCCACTCCGGCTGTGTCCTCCCAAGTCTGTGAACGTCCACGCAG
Seq C2 exon
AGAGCGACCCCACCCCCGAGATGGACAGCCTCATGGACATGCTGGCCAGTACCCAGGGCCGCCGCATGGATGACCAACGTGTGACAGTCAGCAGCCTGCCCGGCTTCCAGCCCGTGGGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174788:ENST00000311069:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=59.0)
A:
NA
C2:
PF0218812=GoLoco=WD(100=54.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCAGACCAGGAGGG
R:
GCTGACTGTCACACGTTGGTC
Band lengths:
202-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development