RnoINT0108370 @ rn6
Intron Retention
Gene
ENSRNOG00000000993 | Pcp2
Description
Purkinje cell protein 2 [Source:RGD Symbol;Acc:1306217]
Coordinates
chr12:2173593-2173994:-
Coord C1 exon
chr12:2173880-2173994
Coord A exon
chr12:2173718-2173879
Coord C2 exon
chr12:2173593-2173717
Length
162 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGC
5' ss Score
3.48
3' ss Seq
CCTGTCTCTGCTCTGAGCAGAGG
3' ss Score
5.89
Exon sequences
Seq C1 exon
GCAGGTTCACCTGACCAGGAAGGCTTCTTCAACCTGCTGAGCCACGTGCAGGGCGATCGGATGGAGGAACAGCGCTGTTCCTTGCAAGCTGAGCCAGGCCAGACCCCAGAAAGCC
Seq A exon
GTGAGCAGGGGATGATTGGGGGGTGTGTGTGTGTGTGTGTGTTGTCTGAGAAGCAAATGTGGCAGGAATGTAGGGATTCTGGTACCTTGTGGATCTTGGGGCTTGGGGTGGGGAGCTCATTTGGGGTCTGTATTCATGCCCACCTGTCTCTGCTCTGAGCAG
Seq C2 exon
AGGGTGGCCCTGCTCCAGAGATGGACAACCTCATGGATATGCTGGCCAACACCCAGGGCCGCCGCATGGATGACCAGCGTGTAACAGTCAATTCCCTGCCTGGCTTCCAACCTATTGGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000993:ENSRNOT00000001313:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=59.0)
A:
NA
C2:
PF0218812=GoLoco=WD(100=54.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAAGGCTTCTTCAACC
R:
CAATAGGTTGGAAGCCAGGCA
Band lengths:
219-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]