MmuINT0116415 @ mm9
Intron Retention
Gene
ENSMUSG00000004630 | Pcp2
Description
Purkinje cell protein 2 (L7) [Source:MGI Symbol;Acc:MGI:97508]
Coordinates
chr8:3624508-3624900:-
Coord C1 exon
chr8:3624786-3624900
Coord A exon
chr8:3624633-3624785
Coord C2 exon
chr8:3624508-3624632
Length
153 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
3' ss Seq
CCTGTCTCTGCTCCAAGCAGAGG
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCC
Seq A exon
GTAAGCAGGGCGTGATTGGGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAGGAGTGCTGGGGTTCTGGGATCTTGTGGATCTTGGGACTCAGGATGGGGTCTGTATTCATGCCTGCCTGTCTCTGCTCCAAGCAG
Seq C2 exon
AGGGTGGCCCTGCTCCAGAGATGGACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAACAGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004630-Pcp2:NM_008790:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=NA C2=0.997
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=59.0)
A:
NA
C2:
PF0218812=GoLoco=WD(100=54.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCACCGGACCAGGAAG
R:
GATAGGTTGGAAGCCAGGCAG
Band lengths:
229-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: