HsaINT0121885 @ hg19
Intron Retention
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:8773]
Coordinates
chr2:178762785-178769914:-
Coord C1 exon
chr2:178769825-178769914
Coord A exon
chr2:178762926-178769824
Coord C2 exon
chr2:178762785-178762925
Length
6899 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATCTATTTCATCTTTTCTAGGCT
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTTATGCAGATGTATCTTCCATTTTGTGGAATCGCCATATCTAACGCTCAGCTCTTTGCTGCCTCAAGGAAAGAATATGAAAGAAGCAGA
Seq A exon
GTGAGTAAATAAAAACATTGTTGACACTCCTCAAAACTCTCTTTCTGGTTTCTGTAAGTCATTATGTCTTTTAAAAACAGCCAATGAATGATCTTTGAATAGTACAGGAATCTTTTTTATTTGTATAATTCTGCAAGGCTGTGGTTGAAGATACACTTTAAGCAATAAGCCCAAATGGAAGTGGATACACATTATCTGTTGTTATTTGGGGGAAGGGGTACAAGCTTCTTTTAAAAATGAAATTGGCTGGGCACGATGGCTTAAGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGAGTGAATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTTGTCGCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTCACAGTGAGTGGAGATCGCACCACTGCACTCCAGCCTAGGTGACAGACTAGACTCCATCTCAAAAAAAAAAAAAAAAAGGAGATTAATATCACATCTATACTATAAGGCAGCAGATATATCCTTGCTTACTTATGGCTTTGAAGCAATAACACAATTTGGTGATGCTTTTACAACTAAGTTCCTTTAAGAAGCAAGTTATGTTACAAACATGATCTTACCCCCACTTCCCAGATTTTATTTTTGAATTGAAACAATTTTTGGATTGAAACCATTTTTGGATTGAAAGGGTTTCTGAAAGTGCCCTTCACTAGATACTTGGAACAATAATGCAAAGACTGTTTTACAGTATTATAAAGAAACACTTAGAGAGCTCTTTTATACCTTCAGGAGCTATAGATCTAAGTTGCAAAAAAGGCAAAGTCTAGTACTCAAAAAATGCTACATTATCAAATAGAGATTAAATTATATTATACTCATTCTAATTTTAAATATAGGAAGATTACTGTAACAACTTAGAAATATATTTAACAAAACGATGTTCAAAAAGGTTTGAAACCCTAATTAATCTGGCCATCAAGTTGATTAAAATTTCATTTGCTAATTATTATGATTTATGGATATTTTTATCAGTAAACAGATGAACATAGTTGACTAATATAGCCATGGTCTTTAGCATGACATACCACATCTTTTCTCTGTTTTGATCTTCTTTTCATCTTTAGCCCCATGTCTTACCGTGCTCCTGCTTTCATCTGGAACTCCAGCAATATAGTCCCCAATTTCCAGCAAACAATCTGTTTCATTTGATCATACCTTTAGCCGTATTCCTCCCTCGGCCTTCAATGCCTCATGTCAATCCAACTCCTTCCAACCACATCATGTGCCTCACACATTCTTCAGGACCCAGCTCAGCTTTCTGATTAATCTTCCCTTCTTCACTTATGGTTTTGCCTTGTATCTACTGCCACTATTCTATTATGAATACTTATCACACTGTATTATGATATTTGAGGAGGGCCCGCCTCTCCAACTACATTTTGAACTCCTTAAGTGAAGCTTCATATATGATTAATCTTTGCATTCTTGTGTATGGCACAATTAATTTATTCATTCAACAAGTATTGATTATGTAGTTCCCTTCACATGCTGTCTATCCAAATCCCTACCCTTACGGAGCTTACTATTCATGAGAACAATACATATTAGATAAGAAAACAATTTTTTTAAATTGCATAGTATAGGTAGCAATAAATACTGCAAGGAAAAATAAAGTGAGATAAAGGGATAAAGGGTTGAGGAAGGCTGAGTTGGGAGGATGTTTATTTTAGAGGGTTATCAAAAAGGTCTGTATAAGGACATGATCTATAAGCAGAAACTTGAATGAAAAGAAGGAGCAAAGCCACATAAAGGTCTGCGGAGAGCATTTCTGGCCATGGAATACCAAACACAAAGGACCTGGGGCAGGAGAAAGCTTGGTCAGTGTGTTTAGAGAGCAGAGAGAAAGGGGAAGAGTGAAAGGGAAAAAAAATAAAATGAGGACGTGGAGGCAGGCCAGATGGTAGAAAAGCCTGTGGGCATGGCAAGGGCTTTGGCTTTCATTCTGAGTGCAATGGAAAGCCATTAGATGATTTTGAGCTGAGTCTGACTTACTTTTAATAGAGTTCACTCTGGCCTCCCTGGAGATAATAAACTGGCTGGGGAGGGAGGGAGAAGGCTGGAGCAGTGAGAGGACTTAGGAAAGAACTGTATTGAAGTCAAAAAATAATATGGCTGGGACTAGGGCAGTGAGAAGTGACAGATTTCCTCCAAAATCAGTGGTGAAATCTGTGGGGGCTTGCTGATATGGGAAATGAGTGAAAGAGACTCTTGGCTGGCACAGCTGGCAAGTAAACAGTTGGATACAGGAGTCTAAAGCTCTGGGAAGATGTCAGGACTGGAGATTAAGATTTGGGAACCAGCAGCATATAAAGGCTATTTAAAGCCAGGAATCTAGCTGGGTTAATTTAGGGAAGAATATGTAGATAAGAGAATGGAAAGCTCCAAGGACACATCCAGGAGCAAAAGAAGGTCACTAGAAGGAGGGACAAAATGCAGATACTCATTTCCTGGAAGGCAAGTGACATCAAGAAGCAGGGCCTATTCAACTGTGTAAAATACTTCCATTATCTGTTGAATTGGATATTGTCACACACATCCGTGTGAAGAGAGTCTACCAACAGGCTTTGTGTGAGCAACAAGGCTGTTTATTTCACCTGGGTGCAGGCAGGCTGAGTCTGAAAAAGGAGTCAGCAAAGGGTGGTGGGATTATCATTGTTTCTTATAGGTTTGGGATAGGCATACAAAGTACATTCTTAAGGGCGGGGGAGAATATTACAAAGTACCTTCTTAAGGGCGGGGGAGAATATATCGTATCAGTTAGGGTGGGGCAGGAACAAATCACAATGGTGGAATGTCATCAGTTAAGGCTATTTTCACTTCTTTTGTGGATCTTCAGTTGCTTCAGACCATCTGGATGTATACTTGCAAGTCACAGGGGATATCATGGCTTAGCTTGGGCTCAGAGGCCTAACAGATATTATCCTAGATTTTCTTCTCTTTTTCTCCTATCCTGGAGCTAGTCTGCATTGTTATTTGTAAAACTTCCATCACTCATTAATAAAGCAATTTTAAATTAGAAACAATAAAATTACTGTAATGTGATTTGTCAGTGCAAGACTCAAGGCACAATTAATTTTTCCTCTGAGATAAATATTCTTGTATATGGATCCCAGAGGCTCTCTCCATGCAATCACAACAAATTGAAAAGTTAAATAATTGTTCAGTTAATATGATCCATCTGAAGAAATAGTCTAGATGATTAAAGAAATAATGTTTTCCCCATTAATAACAGGGCTTTTTGCTTGTAATTACTGAGACAATTGTCTCATTTTTAATGTCTAAACATGAAATTATTGTTCATTGACCCCTTACAGAGATTTGCTGTCCAAATGCCAAATATCAAGATTCACTTAAAAGTTTTTTCACCTTTTGATGTTCCTGTTTGCTTTGGGATCATGGAGCAATATGGTCCTTAGCTCTGTTCAGTCTTTCTTTAGAGATAATGTAACCACCCAGTGGGTTCACTTTGCCTGCTGCCTAGACAAAGCTGATTTCTCAAGACAGGGGAATTGCAAAAGAGAAAGAGTAATTCACACAGGGTCAGCTGTGCCAGACACCGGAGTTTTATTATTACTCAAATCAGTCTCCCTGGATCAGAGTTTTTAAGGATAATTTGGTGGGTGGGGGAAGGCCAGTGAGTAGGGAATGCTGATTGGTTGGGTTGGAGATGAAATCATAGGGAATTGAAACTGTCCTCTTGCCCTGAGTTAGCTCATGGATGGGGGGGGTCACAAGATCAGATGAGCCAATTTATCGATCTGGGTGGTGCCAGCTGATCCATCAGGTACGGGGTCTGCAAAATATCTCAAGCACTGATCTGAGAAGCAGTTTAGGAAGAGTCAGCTGTATGACTCCTAAGCCATAATTTCTGATCTTGTGGCTAATTTGTTAGTCCTTCGAAGGCATTCTAGTCCCCAGGGAAGAAGGAGGTTTGTTTGGGAAAGGGCTATTGTCATCTTTGTTTTAAACAATAAACTATAAACTGTGTTCCTCCCAAAGTTAGTTCAGCCTATGCCCAGAAATGAACAAGGACAGTTTGGAGATTAGAAGCAAGATGGAGCTGGTTAGGTCAGCCCAGTTATAATTTTGCAATGGTGGTTTCAATAACCCTACCCAGGATATTTGGTCCTCTTTCAATTGCTCATTGAACTGGACTCATTTCATGGATTTCTTAACTCATTCACATGTTTTTTTCTTTTCTTTTCTTTCTTTTTTTTTGAGATGGAGTCTCACTCTGTCATCCAGGCTGTAGTGCAGTGGCGTGATCTCAGCTCACTGCAACTTCCGCCTCCGAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGCACTACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGCTCTAGAACTCATGGCCTCATGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTATTGGCATGAGCCACCACACCCAGCTACTCAAATGCTTTTTTACCTGAATAGATTCAGAGAAGAAATTGTCACATTTCAAATAATTTCAGGACAAATCAAATTCATTATTGAAGTTGAAAATTAGTCATGTCCCTGAGATGATGATCAGCACCATGATGAATAGATGTGAATTTGACAATTCATGAATTCCTTTTGTGAGAGGTCAGACTTGAGATTGCACCTCTTTCTACATTCTGTTGAATCAAGTGCCCTCTGGGCAATTCACTGACTATGTAATTTTCTGATTGCTCTCTGAGAGAAGCATAATGTCTACCACCTGTACATAACCTACTAATCTTAAATCTCTGGAAACATCCATGCCATTAAAAATTCCAAACAAATATTATTTATTATTTATTTTTTATTTTTCACAAATCCATACCTGACCTGAGCAAACAAACATTATTTCAATGCAAAAAAATTGCAGCTAATTTCTTAGCTAGAGAAAACCACGGGTTACTACAATTTAATTTTTAAATAAGTACACAGTTTTCAAGTTAGAGCTTAAGATTTTTTTCTAAGTTGTCTGCTTTTCATTCTGCTGTTTTAAAAAAAAATTAATGTGTTTTCTTTCCTGATATATAAATATCTAAATGTTCTTCTGGACAGTTTGGGATAAAGCAGTATTTCCTCTTGGGTAGAGGAATTAAGGAGGGTACATATGTATGTGTGTATATATGTATATTTTTGTATATGGAGGGTATATATATTTTATATATATGAAGGGTATGTATATATTATATATATTTATATTATATATGTAATTTATGTATTTATATTTAGCAAAGACTAAATGTAAATTACATATATATATATATATATTTAAGAATCTGAAACTTAATTAGCATTCACCTCTCTAATTCTTTCAGAGTTATGTAAGGGATGTGTATTAGTGAAAATGTCTCAAGTTTGACCAAGAACCTGTTTCTTCCTGATAGTGAGGAAAAGCTGCTTTGTAAGTTTCTGAAATCCATGTGCTTTGGAGGTATTCATTATTTATAAAATGTTTTTTGGTTTTGTTTTTTTGTTGTTATTGTTTGTTTGTTTGTTTTTTAGAAAGAGTCTCACTCTGTTGTCCAGACTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCTCCCTGGGTTCAAGCAATTCTGCCTCAGCCTCCAGAGTAGCTGGGACTACGGGAACATGCCACCATGCCTGGCTAAATTTTTTTTGTATTTTTAGTAGAGTCGGGGTTTCACCGTATTAGCCAGGCTGGTCTCAAACTCCTGACTTTGTGATCCACCTTCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCGCCCGGCCAAAATATTGGGTTTGTACCTAGTTGCATTGCAGAAAAATCACTACAGAAAAGTGGAAATGCCTGTAGCTAATGGTTATATGATCCCTGTGTCAAACTGAAATATTAATAATCAGAATCTAGTTTTAAAGAGTTTATTCAAGTGAAAAGCTGGGAATGGCCAATTCGGGAGATACAGACTCCAGAGAAATGGGGTAAATGTTCCAAAGTTAAAAGTTAAGCTCCTGCTTCTACAGGCACAAAGTAAAGAAATTTAATAGGGTTTCAGCATTTTCTATACAAGGCCGGTGTATGAGTTATAGCAATATAATTAGTTACAGTTTGTTTTCTTTTCTATACAGCTTGTTTTCTTCATAGCTGGTTTTCATTTTCTTTCCAATTTAAAAGAGTATATTTAACATTCCATCTTAAGGCAATGTTATGGCTATGGAGTCCTTGTGTGAGAAGAGTAAGAGGGAAGTTAATCTGTAATGAAGATCAACAGTGAAGAGGGAAGGGGTATTCTCTGGTGCTCATTAGTAATTTTCAACATTTTACCAAACAATTTTGGTAAGGAAGAAGGCTAATCTATAGTCAAGAGAAACAAGGGTTATAGCTGCCTTGGTTACACCTGCCTCTCAAGTGACCCCTATAATCAGCATCCTTTAAGACTCAAAATAATCTAGAGTTCCAATAGCTTAGGTTTTGAATTACTTATCTTCACACCTGTTACAAGAACTAGCTCTATTCTCAAGTTGTATTTTGCAGTTTAAGCATGTGTTCTAAAATTGAGAGATAAAAATATGTCAAAACAATCATAAAATTTTTTAAAATTAGCTACACAAAAAGATTTACTATATTTTATTGAAGCAAAGATTAAATTTTAAGAAGAAAAGCAACTTTTTTTCAGTTTTACATCCACTTATATACATCTATTTCATCTTTTCTAG
Seq C2 exon
GCTTTGCTAGAGGTGGTTAATGACCTCTTTGAAGAACAGACTGACCTGGAGAAAATTGTCAAGAAAATAATGCATCGGGCCCAAACTCTGCTGAAATGTGAACGCTGTTCTGTTTTACTCCTAGAGGACATCGAATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655-PDE11A:NM_001077197:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(13.5=40.0)
A:
NA
C2:
PF0159021=GAF=PU(20.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)