GgaINT0045452 @ galGal3
Intron Retention
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16707248-16710117:+
Coord C1 exon
chr7:16707248-16707337
Coord A exon
chr7:16707338-16709976
Coord C2 exon
chr7:16709977-16710117
Length
2639 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTCTCTCTCCTTGTATACAGGCT
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTGATGCAGATGTACCTCCCATTCTGTGGGATTGCCATATCCAATGCCCAGCTATTTGCAGCTTCAAGGAAGGAATATGACAGAAGCAGG
Seq A exon
GTGAGTAACAAAATGTAAGTAAGTCGCTCCAAAAGTAATGCCTCCTATTTATTTCTATGGAAACTACCTTAGCTAGAAAGAGCACAAATACACTATTGGATAGAGCAAGTTATCAGAGACAAAACGCTATTTTTTTTAACATAGACACCACCATTAGCTATGCATTTTTGCTGGTGATGAAAAAGAGCCTGCGTGCTATGCTCATAAAAAGCTCTGCAGCTGACCAGAACATGGCTTCTTTCATGCTGCTGTCACCACTGCTGAAACGTGTCACCCACTGCCTCAGTGTGCTCACATCCACTGTTTGGTCTCCATAAACAATTCAGCAAGTGTCAATGAGTGTCAGTGGTTGCCATTTTTTTCTGCGAGGAATTCAGTGACACACCTTTGCTTCTTATGCACTTCCATTTCAGATGCTATTTTACCAGACTGCCCCTCTGCTGCCATCTATCACGACAACAACATGTAACAGAATACTGGCAGGTTCAGACTCTAATGCCATATCAGCAGTGTCCACCTCTGATGTTGTGGACCAACATAATAAAATAGGAGGCAGTGCTTTTTTGAGCAGTCCTCATATGTTGGACCAGTGTCAAATCTTCATCTTTTGTTCTTTCAGATTCCAGCTATACGTACTTGTTTGCTAAGCAGACTGTTTTAACTATATTTTATTTCCAAGGACGCATTTCCCGCAGATAGCGAACTTTACTAAGACAGCAAGCAGGGAACGTGGGAGGAAAAGCTCTTGGTGGTATCTGTTGTTTCCTGATGTCAGTTTCTTGTTTTGGAGTACTGAGACAATTGTGCTGGTGACACAGTGCAGTAGAAAGAGTTACACTGGCAGTGATTCAAACTCTAGTAAAACTCCAGAAATATCAAAACTTTGGCATGCTGGATTTGCAGTATTCAATTCATGTGTGAATAATTTAGATTCATCTTTGTAAAAGTAAGCAAGCAAAGATTTGTTTGTGAAAGATTTCGACAGCATGTATCTGCATAGATATGTTACTCATGTTACTCATGGTTGCTAATGATACGTGTGAGTTGGGATAGAAGGCTCCAAGGAAGTGAAAGTAACGCTGAGCTCACATGCCCTTTGCTTTTTGGAGAGATTTTATTTTTTAAAGAAATGAAACGGTGGTTTGGAAAGTTTTTTCCTGATTTCACACTGAATTTTCAGTTGAAATACTATCTGGAGTGTCTAACAAATCTTACTTCACAAAGCTGAGGAAACTACAGTGGGGTTGGTCCTTGTATTGAGCACTAACATTTTCATTGCTTGAATTTTAGTGCTTTTCATGTATGAAGGTTAGTGATTTCCACCCATCTGAAAACTAAAAATAGCCCATTCTAATAATGTGTGGATGTAAAGATCATTCAATATTTGAGCTTGTCTTTTGTCCAGGTCTGACTAGCAACTACTATATTTTGGGTGTGGAGACGTGGAGGAGGCTTGGAAAAAAAATGTTTTTCTGCCACTGGCAGTGGTGCTTTACTTTGTTTGATGTTGAAACAAAATGTTTTGAGCACTTAGGGATTTAAAATTTGCTACAGATTCCCAGCCTGCTGGGAACAATGACAGGCTTTTGAGGAAGTAGCATTTAATCTTCTGAGAGACGTTCTGCAGAAGAGTATTTTGGATGTTCTCATTTGTCATCAGAAAACGGTCAATTCTGGTGGGTGGACATATTAGGAAATAGGATTAGTAATGCAGGTATTTTTTCTTAGTGCTTCATCCATGGGAGGCATAATAAATATTTGTTGCCATTTTACAGGTGTACAGTAGTCTGTACTTGTGTTTATGACCTGTTTACGGTCTTCAGCTTTGGCTAGTTCATGACTGAAAATAGTTGGCAAGTAAAATGTGATAGGTATAAACCCATATTTTGGCCTCCCCGTCAATGAGGGTATGAGCAGTGGCAACTTCAGTGACCGTGATCAACATTTTGACGACCACTGCATTGGGATAGCTAAGACCACTAACGTTTTTATGCTTATCTATGTGGGTGGTTTTTTTAGTTTCATTGCCTTAAGCCAGAAAAAAGGAAAAAGCTTTGGACCTTTTTGGAACTTGTAAGAAAGATCATGACCTATTGTTTTTGTAGGTGATGAAATGAGAATGAGACCTCTTCATTTTAGATCATTGTATTTCATAAATAAATTGTTAGTGGTAAAAATGGGATCAGAGCGCTGTTGGGATATAAAAGCATTAATATCATCTTTTCTCTCAAATTTTGAACGTGTGAAGTGGGAAATAAAATGAGCATAAATGCACGAGCAAATTCAGTATAGCAAATCAAGTAGCTCAATTCATACTGCATACTTGGGGGATTGAATTCCAGCCGTTGTTTCATTTTTGGACCAAAATGAAATAGTTTGCAAGATTCCCTTTTTATTGCTAGGAGTTGAATTGTGGTCAGTTTTGAGTATAGAGATGTGTACTTATTTCTTTTTCTAGATACCCCTCTGACCACATGCCGCTGACTATATTTGCCATAATCACTAAGAGCTTCATGTGAATGAAGATTTCAGTTTATCGCTCGTACTAAAATCAAGACCACAAAGATTGACTCCTTGCAATGCTCCATATATTTATGTGTTCTGTAATCAGTACAAGAGTTCTCTCTCCTTGTATACAG
Seq C2 exon
GCTTTACTGGAAGTAGTGAATGACCTCTTCGAAGAACAAACTGACTTAGAGAAAATTGTCAAGAAAATTATGCATCGGGCCCAGACTCTTCTCAAGTGTGAACGGTGTTCAGTATTACTTCTGGAAGATATTGAATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215:ENSGALT00000014999:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(7.8=40.0)
A:
NA
C2:
PF0159021=GAF=PU(20.3=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]