HsaINT1026412 @ hg38
Intron Retention
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
Coordinates
chr2:177898058-177905187:-
Coord C1 exon
chr2:177905098-177905187
Coord A exon
chr2:177898199-177905097
Coord C2 exon
chr2:177898058-177898198
Length
6899 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATCTATTTCATCTTTTCTAGGCT
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTTATGCAGATGTATCTTCCATTTTGTGGAATCGCCATATCTAACGCTCAGCTCTTTGCTGCCTCAAGGAAAGAATATGAAAGAAGCAGA
Seq A exon
GTGAGTAAATAAAAACATTGTTGACACTCCTCAAAACTCTCTTTCTGGTTTCTGTAAGTCATTATGTCTTTTAAAAACAGCCAATGAATGATCTTTGAATAGTACAGGAATCTTTTTTATTTGTATAATTCTGCAAGGCTGTGGTTGAAGATACACTTTAAGCAATAAGCCCAAATGGAAGTGGATACACATTATCTGTTGTTATTTGGGGGAAGGGGTACAAGCTTCTTTTAAAAATGAAATTGGCTGGGCACGATGGCTTAAGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGAGTGAATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTTGTCGCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTCACAGTGAGTGGAGATCGCACCACTGCACTCCAGCCTAGGTGACAGACTAGACTCCATCTCAAAAAAAAAAAAAAAAAGGAGATTAATATCACATCTATACTATAAGGCAGCAGATATATCCTTGCTTACTTATGGCTTTGAAGCAATAACACAATTTGGTGATGCTTTTACAACTAAGTTCCTTTAAGAAGCAAGTTATGTTACAAACATGATCTTACCCCCACTTCCCAGATTTTATTTTTGAATTGAAACAATTTTTGGATTGAAACCATTTTTGGATTGAAAGGGTTTCTGAAAGTGCCCTTCACTAGATACTTGGAACAATAATGCAAAGACTGTTTTACAGTATTATAAAGAAACACTTAGAGAGCTCTTTTATACCTTCAGGAGCTATAGATCTAAGTTGCAAAAAAGGCAAAGTCTAGTACTCAAAAAATGCTACATTATCAAATAGAGATTAAATTATATTATACTCATTCTAATTTTAAATATAGGAAGATTACTGTAACAACTTAGAAATATATTTAACAAAACGATGTTCAAAAAGGTTTGAAACCCTAATTAATCTGGCCATCAAGTTGATTAAAATTTCATTTGCTAATTATTATGATTTATGGATATTTTTATCAGTAAACAGATGAACATAGTTGACTAATATAGCCATGGTCTTTAGCATGACATACCACATCTTTTCTCTGTTTTGATCTTCTTTTCATCTTTAGCCCCATGTCTTACCGTGCTCCTGCTTTCATCTGGAACTCCAGCAATATAGTCCCCAATTTCCAGCAAACAATCTGTTTCATTTGATCATACCTTTAGCCGTATTCCTCCCTCGGCCTTCAATGCCTCATGTCAATCCAACTCCTTCCAACCACATCATGTGCCTCACACATTCTTCAGGACCCAGCTCAGCTTTCTGATTAATCTTCCCTTCTTCACTTATGGTTTTGCCTTGTATCTACTGCCACTATTCTATTATGAATACTTATCACACTGTATTATGATATTTGAGGAGGGCCCGCCTCTCCAACTACATTTTGAACTCCTTAAGTGAAGCTTCATATATGATTAATCTTTGCATTCTTGTGTATGGCACAATTAATTTATTCATTCAACAAGTATTGATTATGTAGTTCCCTTCACATGCTGTCTATCCAAATCCCTACCCTTACGGAGCTTACTATTCATGAGAACAATACATATTAGATAAGAAAACAATTTTTTTAAATTGCATAGTATAGGTAGCAATAAATACTGCAAGGAAAAATAAAGTGAGATAAAGGGATAAAGGGTTGAGGAAGGCTGAGTTGGGAGGATGTTTATTTTAGAGGGTTATCAAAAAGGTCTGTATAAGGACATGATCTATAAGCAGAAACTTGAATGAAAAGAAGGAGCAAAGCCACATAAAGGTCTGCGGAGAGCATTTCTGGCCATGGAATACCAAACACAAAGGACCTGGGGCAGGAGAAAGCTTGGTCAGTGTGTTTAGAGAGCAGAGAGAAAGGGGAAGAGTGAAAGGGAAAAAAAATAAAATGAGGACGTGGAGGCAGGCCAGATGGTAGAAAAGCCTGTGGGCATGGCAAGGGCTTTGGCTTTCATTCTGAGTGCAATGGAAAGCCATTAGATGATTTTGAGCTGAGTCTGACTTACTTTTAATAGAGTTCACTCTGGCCTCCCTGGAGATAATAAACTGGCTGGGGAGGGAGGGAGAAGGCTGGAGCAGTGAGAGGACTTAGGAAAGAACTGTATTGAAGTCAAAAAATAATATGGCTGGGACTAGGGCAGTGAGAAGTGACAGATTTCCTCCAAAATCAGTGGTGAAATCTGTGGGGGCTTGCTGATATGGGAAATGAGTGAAAGAGACTCTTGGCTGGCACAGCTGGCAAGTAAACAGTTGGATACAGGAGTCTAAAGCTCTGGGAAGATGTCAGGACTGGAGATTAAGATTTGGGAACCAGCAGCATATAAAGGCTATTTAAAGCCAGGAATCTAGCTGGGTTAATTTAGGGAAGAATATGTAGATAAGAGAATGGAAAGCTCCAAGGACACATCCAGGAGCAAAAGAAGGTCACTAGAAGGAGGGACAAAATGCAGATACTCATTTCCTGGAAGGCAAGTGACATCAAGAAGCAGGGCCTATTCAACTGTGTAAAATACTTCCATTATCTGTTGAATTGGATATTGTCACACACATCCGTGTGAAGAGAGTCTACCAACAGGCTTTGTGTGAGCAACAAGGCTGTTTATTTCACCTGGGTGCAGGCAGGCTGAGTCTGAAAAAGGAGTCAGCAAAGGGTGGTGGGATTATCATTGTTTCTTATAGGTTTGGGATAGGCATACAAAGTACATTCTTAAGGGCGGGGGAGAATATTACAAAGTACCTTCTTAAGGGCGGGGGAGAATATATCGTATCAGTTAGGGTGGGGCAGGAACAAATCACAATGGTGGAATGTCATCAGTTAAGGCTATTTTCACTTCTTTTGTGGATCTTCAGTTGCTTCAGACCATCTGGATGTATACTTGCAAGTCACAGGGGATATCATGGCTTAGCTTGGGCTCAGAGGCCTAACAGATATTATCCTAGATTTTCTTCTCTTTTTCTCCTATCCTGGAGCTAGTCTGCATTGTTATTTGTAAAACTTCCATCACTCATTAATAAAGCAATTTTAAATTAGAAACAATAAAATTACTGTAATGTGATTTGTCAGTGCAAGACTCAAGGCACAATTAATTTTTCCTCTGAGATAAATATTCTTGTATATGGATCCCAGAGGCTCTCTCCATGCAATCACAACAAATTGAAAAGTTAAATAATTGTTCAGTTAATATGATCCATCTGAAGAAATAGTCTAGATGATTAAAGAAATAATGTTTTCCCCATTAATAACAGGGCTTTTTGCTTGTAATTACTGAGACAATTGTCTCATTTTTAATGTCTAAACATGAAATTATTGTTCATTGACCCCTTACAGAGATTTGCTGTCCAAATGCCAAATATCAAGATTCACTTAAAAGTTTTTTCACCTTTTGATGTTCCTGTTTGCTTTGGGATCATGGAGCAATATGGTCCTTAGCTCTGTTCAGTCTTTCTTTAGAGATAATGTAACCACCCAGTGGGTTCACTTTGCCTGCTGCCTAGACAAAGCTGATTTCTCAAGACAGGGGAATTGCAAAAGAGAAAGAGTAATTCACACAGGGTCAGCTGTGCCAGACACCGGAGTTTTATTATTACTCAAATCAGTCTCCCTGGATCAGAGTTTTTAAGGATAATTTGGTGGGTGGGGGAAGGCCAGTGAGTAGGGAATGCTGATTGGTTGGGTTGGAGATGAAATCATAGGGAATTGAAACTGTCCTCTTGCCCTGAGTTAGCTCATGGATGGGGGGGGTCACAAGATCAGATGAGCCAATTTATCGATCTGGGTGGTGCCAGCTGATCCATCAGGTACGGGGTCTGCAAAATATCTCAAGCACTGATCTGAGAAGCAGTTTAGGAAGAGTCAGCTGTATGACTCCTAAGCCATAATTTCTGATCTTGTGGCTAATTTGTTAGTCCTTCGAAGGCATTCTAGTCCCCAGGGAAGAAGGAGGTTTGTTTGGGAAAGGGCTATTGTCATCTTTGTTTTAAACAATAAACTATAAACTGTGTTCCTCCCAAAGTTAGTTCAGCCTATGCCCAGAAATGAACAAGGACAGTTTGGAGATTAGAAGCAAGATGGAGCTGGTTAGGTCAGCCCAGTTATAATTTTGCAATGGTGGTTTCAATAACCCTACCCAGGATATTTGGTCCTCTTTCAATTGCTCATTGAACTGGACTCATTTCATGGATTTCTTAACTCATTCACATGTTTTTTTCTTTTCTTTTCTTTCTTTTTTTTTGAGATGGAGTCTCACTCTGTCATCCAGGCTGTAGTGCAGTGGCGTGATCTCAGCTCACTGCAACTTCCGCCTCCGAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGCACTACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGCTCTAGAACTCATGGCCTCATGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTATTGGCATGAGCCACCACACCCAGCTACTCAAATGCTTTTTTACCTGAATAGATTCAGAGAAGAAATTGTCACATTTCAAATAATTTCAGGACAAATCAAATTCATTATTGAAGTTGAAAATTAGTCATGTCCCTGAGATGATGATCAGCACCATGATGAATAGATGTGAATTTGACAATTCATGAATTCCTTTTGTGAGAGGTCAGACTTGAGATTGCACCTCTTTCTACATTCTGTTGAATCAAGTGCCCTCTGGGCAATTCACTGACTATGTAATTTTCTGATTGCTCTCTGAGAGAAGCATAATGTCTACCACCTGTACATAACCTACTAATCTTAAATCTCTGGAAACATCCATGCCATTAAAAATTCCAAACAAATATTATTTATTATTTATTTTTTATTTTTCACAAATCCATACCTGACCTGAGCAAACAAACATTATTTCAATGCAAAAAAATTGCAGCTAATTTCTTAGCTAGAGAAAACCACGGGTTACTACAATTTAATTTTTAAATAAGTACACAGTTTTCAAGTTAGAGCTTAAGATTTTTTTCTAAGTTGTCTGCTTTTCATTCTGCTGTTTTAAAAAAAAATTAATGTGTTTTCTTTCCTGATATATAAATATCTAAATGTTCTTCTGGACAGTTTGGGATAAAGCAGTATTTCCTCTTGGGTAGAGGAATTAAGGAGGGTACATATGTATGTGTGTATATATGTATATTTTTGTATATGGAGGGTATATATATTTTATATATATGAAGGGTATGTATATATTATATATATTTATATTATATATGTAATTTATGTATTTATATTTAGCAAAGACTAAATGTAAATTACATATATATATATATATATTTAAGAATCTGAAACTTAATTAGCATTCACCTCTCTAATTCTTTCAGAGTTATGTAAGGGATGTGTATTAGTGAAAATGTCTCAAGTTTGACCAAGAACCTGTTTCTTCCTGATAGTGAGGAAAAGCTGCTTTGTAAGTTTCTGAAATCCATGTGCTTTGGAGGTATTCATTATTTATAAAATGTTTTTTGGTTTTGTTTTTTTGTTGTTATTGTTTGTTTGTTTGTTTTTTAGAAAGAGTCTCACTCTGTTGTCCAGACTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCTCCCTGGGTTCAAGCAATTCTGCCTCAGCCTCCAGAGTAGCTGGGACTACGGGAACATGCCACCATGCCTGGCTAAATTTTTTTTGTATTTTTAGTAGAGTCGGGGTTTCACCGTATTAGCCAGGCTGGTCTCAAACTCCTGACTTTGTGATCCACCTTCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCGCCCGGCCAAAATATTGGGTTTGTACCTAGTTGCATTGCAGAAAAATCACTACAGAAAAGTGGAAATGCCTGTAGCTAATGGTTATATGATCCCTGTGTCAAACTGAAATATTAATAATCAGAATCTAGTTTTAAAGAGTTTATTCAAGTGAAAAGCTGGGAATGGCCAATTCGGGAGATACAGACTCCAGAGAAATGGGGTAAATGTTCCAAAGTTAAAAGTTAAGCTCCTGCTTCTACAGGCACAAAGTAAAGAAATTTAATAGGGTTTCAGCATTTTCTATACAAGGCCGGTGTATGAGTTATAGCAATATAATTAGTTACAGTTTGTTTTCTTTTCTATACAGCTTGTTTTCTTCATAGCTGGTTTTCATTTTCTTTCCAATTTAAAAGAGTATATTTAACATTCCATCTTAAGGCAATGTTATGGCTATGGAGTCCTTGTGTGAGAAGAGTAAGAGGGAAGTTAATCTGTAATGAAGATCAACAGTGAAGAGGGAAGGGGTATTCTCTGGTGCTCATTAGTAATTTTCAACATTTTACCAAACAATTTTGGTAAGGAAGAAGGCTAATCTATAGTCAAGAGAAACAAGGGTTATAGCTGCCTTGGTTACACCTGCCTCTCAAGTGACCCCTATAATCAGCATCCTTTAAGACTCAAAATAATCTAGAGTTCCAATAGCTTAGGTTTTGAATTACTTATCTTCACACCTGTTACAAGAACTAGCTCTATTCTCAAGTTGTATTTTGCAGTTTAAGCATGTGTTCTAAAATTGAGAGATAAAAATATGTCAAAACAATCATAAAATTTTTTAAAATTAGCTACACAAAAAGATTTACTATATTTTATTGAAGCAAAGATTAAATTTTAAGAAGAAAAGCAACTTTTTTTCAGTTTTACATCCACTTATATACATCTATTTCATCTTTTCTAG
Seq C2 exon
GCTTTGCTAGAGGTGGTTAATGACCTCTTTGAAGAACAGACTGACCTGGAGAAAATTGTCAAGAAAATAATGCATCGGGCCCAAACTCTGCTGAAATGTGAACGCTGTTCTGTTTTACTCCTAGAGGACATCGAATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655:ENST00000286063:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(13.5=40.0)
A:
NA
C2:
PF0159021=GAF=PU(20.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains