MmuINT0116777 @ mm10
Intron Retention
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:76211023-76215407:-
Coord C1 exon
chr2:76215318-76215407
Coord A exon
chr2:76211164-76215317
Coord C2 exon
chr2:76211023-76211163
Length
4154 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACATCCATCTCTGTCGCCAGGCC
3' ss Score
8.16
Exon sequences
Seq C1 exon
GTTATGCAAATGTATCTTCCGTTCTGTGGAATCGCCATATCTAATGCTCAGCTCTTCGCTGCCTCAAGGAAAGAATACGAAAGAAGCAGG
Seq A exon
GTGAGTAGCTAGCTTCAAGCTCGCTGTCTTCCTGGCTTATGTGAGTCACTCCATCTTTTAAAAGTAGCGGATGATCATTGTCTAGTCTGAAGATCATTCTTGTTTGTGCAAGCCTGGAACGACAGGGCTGAAGATCCCTTTAAACAATGCATGAGTTATGGTTACAAGAAAATACACATTTTCTGTTGTTGTTTCTGGGAAATAGAACTGGTTTCTTTTAAAAAAGGAAATCAACCCACGTCTATACTGTGTGGCAGCGGATATTTATCCTCTGTGCTCTTAGCTTTGAAACAGCAGCAGTTTTAGTTTAGTTCCTTCAAGGGGCACAATTTCACTCCTTGCAGATTCTTTTTCTAAGGTTTTCTAGAAGAAGCAATCTAAGGCATGTAGGACCATCAAAGAAGCACTGCTTTGTAGGGACATTAGAGGCAATGATCTTATATACCTTTAGGAACTGTAGACTCACACAGTAAAATGTACCCACAGACTCATACAGCCTTAAATTATCAACCAGAGATCGAGGTTCACTCTACATTTATATATATGAAGATCATTGTTACAACCCAGAAACAAACTCAATAAGAAAATGTTAAAAATGGATTAAATCCCTCAGCCAATGAAATAGATTAAAGTGTATTTACAAAAGCATCATGACAGTGACTATTTGATAGTAAGCATATGAATACTTGCTGACCACACAGCCGTCTTCCTTAGCAGGGCGTAGTGTGCCCTTCCTCCACCTGGGTCTCCTGTTCATTTTAGAACCATTTCTTGCTCGACTATTCCTTTCATTTCCTATTCCAGTGATGTTTCTGTGACTTCCAGATAACAGCCTGTTTGTTTCATCTTATCACACTCCTACCTCCACCCCACCCCCACCCCCACCCCCTTTCTCCTCTGTTTCCAATGACTCCTCTCCCTCTGCCAACTGCCTCACAGGTCCCAGTGCATCTTCCTCTCCCCACTTCCGGTCCTTCCTTGTTCTAGTGCAGGTACCCATCACGTTATTATAATATTTGACGATGGCCCTCTTCTGTAATCCCATTATTCCTTAAGGGAAGCTTCTTGTACTAAGACAGTCCTTTCATCCTTGTGGATGGCACAGTTTACTTATTCATTGAACAAATACATATTGTGTAGTTCTCATGAGATACTGTCTGTCCTTACAAAGCTTACTAGTCTAGTGGAAACAATAGATAATAAAAAAGAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAACCACACAATGTCAGACAGTGATAAGCGTTATAAACAAAGATAAAGGGAGAGAGATGGACAGGCACAGTTATGGTAGGTTTGATTAAGCAGATTATTTATTTTTTGGAGCTGATGGGAAGGTGTCTATAGGGAGTTGATAGAAGGAGAATGAAGTGAGAAGCCCAGCCACTGGAAGACCTGTGCAGAGTGTCCAGACCATGACACAGCAGCTGCAAAGACCCTGTGTTGTTGGTGGATAGGGGGACTTCAGGAATCCGAGGAGAGGATGAAAGACAAGCCAATGAAGATAAGAAGCTGAACCCAGGGCTACTGGGGAGAAAGGCCTACGGGCAAGTCAGGAACTGTTAATTTTAAGGCTCCTAGTAGAAAGCCAGTAGGAGACTTTTGAGCTGATTGCAATTCATTTAAAAAAAAAGCAAACACCATGACCTCCTTGGAAGCAGGGAAGGGCTGGGGAAGATTGGATAATGGGCAGTGACAGAAGACTGGGAGGGGAGCCAGAAGACTCCATTGAAGTCTAGAGACAAGGTGGATGGCATTAGGGCCATAAGAAGTGAGGAACTCCCTCCAAATCTGTGGCAAAACATTTAGGGCTTGCTGGTGTGGGGGACAGCGAAGGAGACTTTGGGCTTATGCACAAGTTTGTGGGCAGCAGAGACTTGGAATATGGAGCTACCCTTGAGGGAGTGTAATATTAGGGGTGGAGATCGTGTAAAGCCAGGAGACCTGCTGAAGGAATCTGGGAAGACTGTGTGGAGACGAAAGCAGAGCAGAGGAGGATCCAAGAGTCAGCTCAGGAGTAGAAGGGAAGGGGGCGCACAGCTGGTTTACACAGAAGTGAGGTCAAGAAGCAGAGCCCACCACCCTCGGAACTGCTCCCACAGGCTCTCCAACTGTTGGATCATTCTAGATGTGCCCTCTTCTCCTCCTCTCCTGGAGCTAGCCTTTTTGCTATTTGTAAAATCTTTCACCATTCGTTAGCAAAGCAGCAATTTTTAATTAGATAGAATGAAATTGCTGTAATGTGATTTGTCAGTGCAAGACTCCGGGGGCATTAATTTCCCTTTTGAGAGAAATGTTCTTGTGGAGAAGGTCCAGAGGCTCTCCACGCAATCATAACGAATTGAAAAGTTAAATAATTGTTCTGTTAATATGATCCATCTGAAGAAATAATCCGAGTGATTAAGGTAATGATGTTTCCCTCTTAATAACAGGGAATTTGCTTGTAATTACTCAGACAATTGTCTCCCTTTGAAAAATTATTTCTTTTATTTTTTGAGATTACAATTAGATCATTTTCCTCTTCTATTTCCTCCCTTCAAGCTCACCCGTATATCCCTTCTTGCTGTCTTTCACGTTTATTGATTAATTATTGTTATACACATATGTACATTTCTTAATACATAAACACAACCTGCTCAACCTGTATAATGTTACTTGTATGTATGTTTTCATGGCTGTTTGGAACTGAATAGCCCAGTGTGGGTTCTTCCCTGAGTCAGAATTGTCTTCCATTTAATGTCTTTGACCATGAAGTTACAGTGCATTGAGTTCTCACAGCAGTTTGCTGTCCAAAGGCCAAAGAGGCTGGCTTCAGTTAACATAGGATTTGGAATCCAGTGTTTCTCTTAGCTTTGGAATCATGGGGCAATGTGACCCTTATCCTCAACAATGGTCTTTCTTCAAAGAGAGTGCTCACCAGGAGCTTCGGTCCTGTCCATGTCCTCCTCAGCTAGATTCATCTAATGGATGCCTTAACTCATTCAAATGCTTTTCTATCTCAAGGGAGTCTGAGAAGAAGTTTTGTTTCAGATTATTTCAGGATAAATCAAATTTCAGGACGAGCCATTCCTGCAGTTGAAAACCAGTCATACCCCTGGGCTGTTGATTGACATTATGATGCATAAATTCGAACCTGGGTATTCATGGAGGTTTTGTGTGTGTGTGAAAGGTCACAGGCAAATGAACAATTTGTCTAATGCTACTAAATAAAGCACAAGCCAATCCAGTGGCCCTGTAATTCTCTGAAGAGGGTTCTGAAAGAAGCTGAATTTCTACCACCTATAAATAGCCTAATTGTTCTGCAAATTCTGAAGAAAACAAAAGTCACTAAAAATTCCAAACAAATATTACTTCAAAGCATAAATTGCAAGCTCCCCTTGGCTACAGAGAGTAATAGGTTACTGCAGCTTAGTTTTGAAATGAGTACACTGTGCTCAACTTGTAATTTAATCTTTTCCATTAATTTATGTGCTTCCCAACCTGCCACCTTAACAATAATTCTAACGAGGGTTTCTTTCCTGAGACATCCAGTAATATCGGAATGTTCTAGTGGACAGCTGGGAGTGAGGCAGTATTTCTTCTTGTATAGAGAGATTAGTGTTCTGATACACACACAGACACACACACACAGCTTTAATAACATTTACCTGCATGATTCTTTCAGAATTCAGAATTCTGGAAGAGGTAGGTATTAGTGAAAATGGGTATCAAATTGAGTCATGAAGCTATTTTTTCTTAAGAGTGAAGAAAGCCTGCTTTGGAGTTTTCTGAAATAAATATGCTCTGGAGAGAGCCAAGTACTTGTTATTTAAAAAATGTCAGTTTTGTGCTCAGTCATATTGAAGAAAAGCCACCGCAGTGGGTAAAGCACCCACATGTAATAACTACGTGGTTACTGTTACACTCGTCGCTATATTATCTGGTTATATTTTTCGATCTCAGGGTATGTTATAAAGTGAAATTGCTGAGCCATGCTAGAAAAACCATAAATGTTTTAAAAATTAGCCACATGAAATATTTGTTATTAGAGAAAATATTGCATAGAGTTCTGAGGGAGGAAAGGCTGGTGCGTTTCTGCCTTATACTTCTGACTACATCCATCTCTGTCGCCAG
Seq C2 exon
GCCCTGCTGGAGGTGGTCAATGACCTCTTTGAAGAACAGACTGATCTGGAAAAGATTGTCAAGAAAATAATGCATCGGGCCCAAACTCTGCTGAAATGTGAACGCTGTTCCGTCTTACTTCTAGAAGACATTGAGTCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270:ENSMUST00000099992:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(7.8=40.0)
A:
NA
C2:
PF0159021=GAF=PU(20.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types