HsaINT0121969 @ hg38
Intron Retention
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72590427-72591356:-
Coord C1 exon
chr11:72591297-72591356
Coord A exon
chr11:72590581-72591296
Coord C2 exon
chr11:72590427-72590580
Length
716 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
AACCGCTCGGCCTGCCCCAGACC
3' ss Score
3.9
Exon sequences
Seq C1 exon
GTGCACTGTGGCCAGCTGAGTGATAATGAGGAATGGAGCCTGCAGGCGGTGGAGAAGCAT
Seq A exon
GTGAGTGGGAGTGGGGCCATGTGCAATGAGGCTGAAGACCCTTATCACAGCTGGTGGGAAGATGGCCTGGCCAGGGAGCTGGACAGACCTGGGTTTCAGCTTCGGCTTTGCTGCTTTTGAGCTGTGTGACCTTGAGCAAGTCACTAAACGTCTCTGGGCCTCAGTTTCACACCTGAAAATGGGGATAATGATAGCACCGACTGACCTAGGGCAGTGGTGAAACAAAACTGGTCAAATATCTTGTAAATACACACGGTTGCCAACTTACAATTTTCGACTTTTTGATGGATTTATGGGGAAGCAACCCTATCCTAAGTCCAGGAGCATCTGTACTTAGAAAGAACCCTCCACATAATGATACTGAGGCTCTTTCATGCCTGAGACTTTATGATTTTGTGACTTTAACAAGGACTTACGACTTCCTGAGGGGGCTGGAGACAGAAATCTGACATCTTGTCTTGGAAGAATCTAGGGGCTAGGGATGGAGATAGACCCTGTACCCTCCTGTTCCTGGACCGCCGGACGCTCCAGGGGCTGTGGGAGCCCCCGGGGGAGCCCTCAGGAAGGTAGAGTCCAGGGATGAGGTGTTTGGGACGGCGGCGGGGTCCCTGGGCCCGGCAGGCAGAGGGAACGGCGGGAGCAAAGGCAGGAATCCCGCTGCAGCAAGCGCAGCGAGCTTGGGGCGAGCGGCGCGCTAACCGCTCGGCCTGCCCCAG
Seq C2 exon
ACCCTGGTCGCCCTGCGGAGGGTGCAGGTCCTGCAGCAGCGCGGGCCCAGGGAGGCTCCCCGAGCCGTCCAGAACCCCCCGGAGGGGACGGCGGAAGACCAGAAGGGCGGGGCGGCGTACACCGACCGCGACCGCAAGATCCTCCAACTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642:ENST00000334456:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACTGTGGCCAGCTG
R:
CGCACAGTTGGAGGATCTTGC
Band lengths:
214-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development