HsaEX0046196 @ hg38
Exon Skipping
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72586070-72591356:-
Coord C1 exon
chr11:72591297-72591356
Coord A exon
chr11:72590427-72590580
Coord C2 exon
chr11:72586070-72586181
Length
154 bp
Sequences
Splice sites
3' ss Seq
AACCGCTCGGCCTGCCCCAGACC
3' ss Score
3.9
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGCACTGTGGCCAGCTGAGTGATAATGAGGAATGGAGCCTGCAGGCGGTGGAGAAGCAT
Seq A exon
ACCCTGGTCGCCCTGCGGAGGGTGCAGGTCCTGCAGCAGCGCGGGCCCAGGGAGGCTCCCCGAGCCGTCCAGAACCCCCCGGAGGGGACGGCGGAAGACCAGAAGGGCGGGGCGGCGTACACCGACCGCGACCGCAAGATCCTCCAACTGTGCG
Seq C2 exon
GTTCACCGACGAGGACGAGCATGTGATCCAGCACTGCTTCCACTACACCAGCACCGTGCTCACCAGCACCCTGGCCTTCCAGAAGGAACAGAAACTCAAGTGTGAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642_MULTIEX2-8/13=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.449 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0159021=GAF=PD(10.7=36.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGCCAGCTGAGTGATA
R:
CTCACACTTGAGTTTCTGTTCCT
Band lengths:
162-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development