BtaEX6059757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008419 | PDE2A
Description
Bos taurus phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001256273]
Coordinates
chr15:52928375-52929681:-
Coord C1 exon
chr15:52929622-52929681
Coord A exon
chr15:52928658-52928811
Coord C2 exon
chr15:52928375-52928427
Length
154 bp
Sequences
Splice sites
3' ss Seq
GACCGCTCCGCCCGCCCCAGACC
3' ss Score
5.4
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGCACTGTGGTCAGCTGAGTGACAATGAGGAGTGGAGCCTGCAAGCTGTGGAGAAGCAT
Seq A exon
ACCCTGGTGGCCCTGAAAAGGGTGCAGGCCTTGCAGCAGCGCGAGTCCAGCGTGGCCCCGGAAGCGACCCAGAATCCTCCGGAGGAGGCAGCGGGAGACCAGAAGGGTGGGGTCGCATACACAGACCAAGACCGAAAGATCCTGCAGCTTTGCG
Seq C2 exon
GGGAGCTCTACGACCTGGATGCATCTTCCCTGCAGCTCAAAGTCCTCCAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008419-'13-16,'13-13,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.423 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0159021=GAF=PU(8.3=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGGTCAGCTGAGTGAC
R:
TTGGAGGACTTTGAGCTGCAG
Band lengths:
107-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]