DreEX6078437 @ danRer10
Exon Skipping
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47486240-47494614:-
Coord C1 exon
chr15:47494555-47494614
Coord A exon
chr15:47487803-47487950
Coord C2 exon
chr15:47486240-47486292
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTTCAGCTC
3' ss Score
10.39
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TTGAGCTGTAAAGCACTGACAGAACAAGATGAACAAAACCTCACCGTCCTGGAGAAACAC
Seq A exon
CTCACTGTTGCCTGTAAGCGAGTCAGAAATGTTCAGAGGTTCTCCAGTGCTCCACATGCTCAATCCCACAATGCACCAGTGGAGGCCAAACCCAGTCCACCAGCGAATGACTACAGAGAACTCGACCGCAAGATCCTACAGCTGTGTG
Seq C2 exon
GTGAGCTGTATGATCTGGACGCCTCGTCTCTGCAGCTCAAAGTCATCAACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0159021=GAF=PU(8.9=26.0)
C2:
PF0159021=GAF=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTGTAAAGCACTGACAGA
R:
ATGACTTTGAGCTGCAGAGACG
Band lengths:
106-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]