RnoEX0064251 @ rn6
Exon Skipping
Gene
ENSRNOG00000019560 | Pde2a
Description
phosphodiesterase 2A [Source:RGD Symbol;Acc:620965]
Coordinates
chr1:166614524-166615526:+
Coord C1 exon
chr1:166614524-166614583
Coord A exon
chr1:166615085-166615226
Coord C2 exon
chr1:166615474-166615526
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACCACTCTGCCTACTCTAGGCT
3' ss Score
7.16
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAGCAGAGCCTGCAGGTGGTGGAGAAGCAT
Seq A exon
GCTCTGGTGGCCCTGCAGAGGGTGCAGGCCCTGCAGCAGCGCAGGCCTGAAGCTGTTCAGAACACCTCAGCGGATCCCTCTGAAGATCAAAAGGATGAGAAGGGATACACCGCCCATGACCGAAAGATCCTGCAACTGTGTG
Seq C2 exon
GAGAACTCTATGACTTGGATGCCACTTCTCTGCAGCTCAAAGTCCTTCGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019560-'30-18,'30-16,32-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.438 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0159021=GAF=PU(4.8=14.6)
C2:
PF0159021=GAF=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGGCCAGCTGAGTG
R:
CGAAGGACTTTGAGCTGCAGA
Band lengths:
106-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]