MmuEX6012693 @ mm10
Exon Skipping
Gene
ENSMUSG00000110195 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:101500388-101501662:+
Coord C1 exon
chr7:101500388-101500447
Coord A exon
chr7:101500977-101501118
Coord C2 exon
chr7:101501610-101501662
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACCACTCGGCCGTCCCCTAGGCT
3' ss Score
8.03
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAACAGAGCTTGCAGGTGGTAGAGAAGCAC
Seq A exon
GCTCTGGTAGCCCTGCGGAGGGTGCAGGCCCTGCAGCAGCGCAGGCCTGAAGCTGTTCAGAACACGTCAGTGGATGCCTCTGAAGATCAAAAGGATGAGAAGGGGTACACCGACCATGACCGAAAGATCCTGCAACTGTGTG
Seq C2 exon
GGGAACTCTTTGACTTGGATGCTACTTCTCTGCAGCTCAAAGTCCTTCAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000110195-'5-28,'5-17,16-28=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.354 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0159021=GAF=PU(9.2=29.2)
C2:
PF134921=GAF_3=PU(9.0=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGGCCAGCTGAGTG
R:
TGAAGGACTTTGAGCTGCAGA
Band lengths:
106-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types