HsaEX1032338 @ hg38
Exon Skipping
Gene
ENSG00000256633 | RP11-169D4.2
Description
NA
Coordinates
chr11:72584572-72587979:+
Coord C1 exon
chr11:72584572-72585056
Coord A exon
chr11:72585135-72585256
Coord C2 exon
chr11:72587801-72587979
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTGGAAGCAC
3' ss Score
4.82
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GGAAGCAGAGGATGTTGCGCGTGCGGAAGCCGGTGCTGTCGTCCACGCCGCGGTAGAAAAGCGGATGGGCATATGCGTCAGGGATGTTCAGGATCTGGCCCGTGGTCGCCACGTGTCCCGCGATGCCCTGATCGGCCGGGATGCGGATCTCATAGCTCTGCCGGAGCAGAGATGGAGTCGAGAGGAAGAAGTTAGTGACCCGGCCACAGAGGGGACTGTTAAACCTCGGGCCGCTCCCCAGCGCCGCCGGCGGACTCCCGGACACCCCTAGGGCCACATACTCCCTCCACACCCTCTCACCTCATCATCCACCACGCCCCCGTCGAACACCTTGGCCACCAGCTCATTCTGATCCAGCAGGAACACAGAGCAGCTGTGGAGGGAGGGGTTTGGTCCTCTGGGGCCTGACAACCCCCTCTGATCGCCCTCACGTCCCATAAGGAGGCAAAGGCCGGATTTCCGAGGCCTGGGAGGAGTGCTCCAAG
Seq A exon
CACCTACTATGTGCCAGGCACTGTGATAGGAGCTGAGGATCCAAAGCCAGCCCTGTCCCTGCTGTATTGGAGCCTACAGTCTAGCGAGGGAGACAGGCATGAAATAAAGGATCCCTCAAAAG
Seq C2 exon
GCCCACCCAACTGTCAACACAGTTCCATGCTGGTAGGTTCTGCAGCTCAGACCTAGGACTCCTGGATCTCCACCCTACCCCAGCAGACCTCAGGCCCGGGCTCTGACACCTACCTAGTCCCAGGCTCTCTAGTGTCCACCTCCTGCAGGAGCTCCAGGCCCTGAAACCCAGCCTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256633_MULTIEX1-1/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATACTCCCTCCACACCCT
R:
CTGCAGAACCTACCAGCATGG
Band lengths:
256-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains