HsaEX6003661 @ hg38
Exon Skipping
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72586070-72596648:-
Coord C1 exon
chr11:72596593-72596648
Coord A exon
chr11:72591297-72591356
Coord C2 exon
chr11:72586070-72586181
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCCCATCCCTCCAGGTG
3' ss Score
13.03
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGCTGGTCATGCCGCTAGCGGACAAGGAGGCTGGGGCCGTGGCAGCTGTCATCTTG
Seq A exon
GTGCACTGTGGCCAGCTGAGTGATAATGAGGAATGGAGCCTGCAGGCGGTGGAGAAGCAT
Seq C2 exon
GTTCACCGACGAGGACGAGCATGTGATCCAGCACTGCTTCCACTACACCAGCACCGTGCTCACCAGCACCCTGGCCTTCCAGAAGGAACAGAAACTCAAGTGTGAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642_MULTIEX2-7/13=6-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0159021=GAF=PD(10.7=36.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCGGACAAGGAGGCTGG
R:
CACTTGAGTTTCTGTTCCTTCTGGA
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains