RnoEX6004022 @ rn6
Exon Skipping
Gene
ENSRNOG00000019560 | Pde2a
Description
phosphodiesterase 2A [Source:RGD Symbol;Acc:620965]
Coordinates
chr1:166609770-166615226:+
Coord C1 exon
chr1:166609770-166609825
Coord A exon
chr1:166614524-166614583
Coord C2 exon
chr1:166615085-166615226
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTCCCTTCTCTCCAGGTG
3' ss Score
12.91
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGCTGGTCATACCCCTGCTGGACAAGGAGACTGGAACTGTGGCAGCCGTCATCTTG
Seq A exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAGCAGAGCCTGCAGGTGGTGGAGAAGCAT
Seq C2 exon
GCTCTGGTGGCCCTGCAGAGGGTGCAGGCCCTGCAGCAGCGCAGGCCTGAAGCTGTTCAGAACACCTCAGCGGATCCCTCTGAAGATCAAAAGGATGAGAAGGGATACACCGCCCATGACCGAAAGATCCTGCAACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019560-'27-16,'27-15,30-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0159021=GAF=PU(4.8=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCCCTGCTGGACAAGGAG
R:
TGATCTTCAGAGGGATCCGCT
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]