BtaEX6059756 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008419 | PDE2A
Description
Bos taurus phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001256273]
Coordinates
chr15:52928658-52934982:-
Coord C1 exon
chr15:52934927-52934982
Coord A exon
chr15:52929622-52929681
Coord C2 exon
chr15:52928658-52928811
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTCTCCCCTCCAGGTG
3' ss Score
14.26
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGCTGGTCATACCGCTGGTGGACAAGGAGGCCGGGGCTGTGGCAGCTGTCATCTTG
Seq A exon
GTGCACTGTGGTCAGCTGAGTGACAATGAGGAGTGGAGCCTGCAAGCTGTGGAGAAGCAT
Seq C2 exon
ACCCTGGTGGCCCTGAAAAGGGTGCAGGCCTTGCAGCAGCGCGAGTCCAGCGTGGCCCCGGAAGCGACCCAGAATCCTCCGGAGGAGGCAGCGGGAGACCAGAAGGGTGGGGTCGCATACACAGACCAAGACCGAAAGATCCTGCAGCTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008419-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATACCGCTGGTGGACAAG
R:
CGGAGGATTCTGGGTCGCTTC
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]