MmuEX6012694 @ mm10
Exon Skipping
Gene
ENSMUSG00000110195 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:101495637-101501118:+
Coord C1 exon
chr7:101495637-101495692
Coord A exon
chr7:101500388-101500447
Coord C2 exon
chr7:101500977-101501118
Length
60 bp
Sequences
Splice sites
3' ss Seq
CGCTTCTCCCTTCTCTCCAGGTG
3' ss Score
12.12
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TGCTGGTCATACCCCTGCTGGACAAGGAGACTGGAAGTGTGGCAGCTGTCATCTTG
Seq A exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAACAGAGCTTGCAGGTGGTAGAGAAGCAC
Seq C2 exon
GCTCTGGTAGCCCTGCGGAGGGTGCAGGCCCTGCAGCAGCGCAGGCCTGAAGCTGTTCAGAACACGTCAGTGGATGCCTCTGAAGATCAAAAGGATGAGAAGGGGTACACCGACCATGACCGAAAGATCCTGCAACTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000110195-'14-17,'14-16,15-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0159021=GAF=PU(9.2=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGGCAGCTGTCATCTTG
R:
CGGTGTACCCCTTCTCATCCT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types