DreEX0006588 @ danRer10
Exon Skipping
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47487803-47501473:-
Coord C1 exon
chr15:47501418-47501473
Coord A exon
chr15:47494555-47494614
Coord C2 exon
chr15:47487803-47487950
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTTTCTCTCTGCAGTTG
3' ss Score
11.03
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
TTGTGATTGTCCCGCTGGTTGATGCTGATGAAGGGAAGGTGATCTGTTTAATTCTG
Seq A exon
TTGAGCTGTAAAGCACTGACAGAACAAGATGAACAAAACCTCACCGTCCTGGAGAAACAC
Seq C2 exon
CTCACTGTTGCCTGTAAGCGAGTCAGAAATGTTCAGAGGTTCTCCAGTGCTCCACATGCTCAATCCCACAATGCACCAGTGGAGGCCAAACCCAGTCCACCAGCGAATGACTACAGAGAACTCGACCGCAAGATCCTACAGCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0159021=GAF=PU(8.9=26.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGTCCCGCTGGTTGAT
R:
CCACTGGTGCATTGTGGGATT
Band lengths:
136-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]