HsaEX0046195 @ hg38
Exon Skipping
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72591297-72597619:-
Coord C1 exon
chr11:72597510-72597619
Coord A exon
chr11:72596593-72596648
Coord C2 exon
chr11:72591297-72591356
Length
56 bp
Sequences
Splice sites
3' ss Seq
CATTGCCCTCTCCCCCTCAGTGC
3' ss Score
9.75
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GGAGGCTATCATCTCCCAGAAGCGGCTGGGCTGCAATGGGCTGGGCTTCTCAGACCTGCCAGGGAAGCCCTTGGCCAGGCTGGTGGCTCCACTGGCTCCTGATACCCAAG
Seq A exon
TGCTGGTCATGCCGCTAGCGGACAAGGAGGCTGGGGCCGTGGCAGCTGTCATCTTG
Seq C2 exon
GTGCACTGTGGCCAGCTGAGTGATAATGAGGAATGGAGCCTGCAGGCGGTGGAGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642-'26-27,'26-23,29-27
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATCATCTCCCAGAAGCG
R:
TATCACTCAGCTGGCCACAGT
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development